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Pull requests: satijalab/seurat

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Pull requests list

Fix typos in spatial and Visium HD vignettes
#10217 opened Nov 20, 2025 by liuzhenyu-yyy Loading…
1
Update loading & visualization for Visium objects
#10215 opened Nov 18, 2025 by anashen • Draft
Fix size deprecation warnings in ImageDimPlot and ImageFeaturePlot
#10210 opened Nov 14, 2025 by YoukaiFromAccounting Loading…
1
aes_string fix Spatial Plotting
#10186 opened Nov 3, 2025 by samuel-marsh Loading…
2
Fix Bug in IntegrateEmbeddings when Ref is specified
#10172 opened Oct 29, 2025 by lldelisle Loading…
Fix do.call slowdown by amending Parenting
#10161 opened Oct 26, 2025 by ning-y Loading…
1
3
Change default value of verbose parameter for LeverageScore within sketchdata
#10145 opened Oct 20, 2025 by Liuy12 Loading…
1
Add InteractiveSpatialPlot functionality to select clusters/visualize sf objects correctly
#10138 opened Oct 16, 2025 by YoukaiFromAccounting • Draft
5
feat: Ultra-large matrix support and Read10X performance optimization
#10017 opened Jul 25, 2025 by BenjaminDEMAILLE Loading…
Feature: Updates for Space Ranger 4.0
#9978 opened Jul 1, 2025 by stephenwilliams22 • Draft
5 tasks
21
Add support for Vizgen objects for InteractiveSpatialPlot
#9977 opened Jul 1, 2025 by YoukaiFromAccounting • Draft
4
update broken link
#9976 opened Jul 1, 2025 by attja Loading…
changes made to view the pages on the lower side
#9934 opened Jun 6, 2025 by abhilashdasari Loading…
fix LabelClusters split.by warning
#9841 opened Apr 23, 2025 by kew24 Loading…
Improves DimHeatmap documentation and default behavior when fast=FALSE (Issue #9810)
#9813 opened Apr 10, 2025 by dkcoxie Loading…
1
9
Update interaction link
#9741 opened Mar 10, 2025 by attja Loading…
add function readMM_fast
#9731 opened Mar 6, 2025 by freeseek Loading…
feature: updates for cellranger 9.0
#9541 opened Dec 10, 2024 by stephenwilliams22 Loading…
37
Added the functionality of scale.factor in NormalizeData being set to "median" of counts
#9389 opened Oct 11, 2024 by pranavm2109 Loading…
Add Option to Plot Percentage of Variance Explained in ElbowPlot Func…
#8929 opened May 24, 2024 by moi-taiga Loading…
1
Sketch Data Improvement
#8913 opened May 18, 2024 by Sandman-1 Loading…
Fixed min.cells.group issue in FindConservedMarkers()
#8910 opened May 17, 2024 by hamelyz Loading…
Fix PercentageFeatureSet
#8659 opened Mar 20, 2024 by maxim-h Loading…
3
Fix corner case issue in BlendExpression
#8486 opened Feb 16, 2024 by egeulgen Loading…
Update umi.assay in GetResidual
#8203 opened Dec 19, 2023 by aladyeva-research Loading…
3
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