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Dear developpers,
I noticed that if I want to use IntegrateEmbeddings but I specify dims.to.integrate and reference I get an error:

Error in dimnames(x) <- dn : 
  length of 'dimnames' [2] not equal to array extent

I could find the origin of the problem. I also so that there was a similar commit: c9f8b5e but unfortunately only the case where reference was not specified was fixed.

You find here the fix for the case where reference is specified.

@anashen anashen changed the base branch from develop to main October 29, 2025 14:43
@anashen anashen force-pushed the IntegrateEmbeddingsWithRefFixDims branch from 745b1cb to 577c139 Compare October 29, 2025 14:44
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