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openproblems-bio / openproblems Public

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Rename items (#932) #21

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Summary
Jobs
- Build target branch
  
  Build (check_dataset_with_schema, validation, executable, docker, src/validation/check_dataset_wi...
  
  Build (check_yaml_with_schema, validation, executable, docker, src/validation/check_yaml_with_sch...
  
  Build (extract_uns_metadata, utils, executable, docker, src/utils/extract_uns_metadata/config.vsh...
  
  Build (yaml_to_json, utils, executable, docker, src/utils/yaml_to_json/config.vsh.yaml, target/ex...
  
  Build (decompress_gzip, utils, executable, docker, src/utils/decompress_gzip/config.vsh.yaml, tar...
  
  Build (openproblems_v1_multimodal, datasets/loaders/multimodal, executable, docker, src/datasets/...
  
  Build (openproblems_neurips2022_pbmc, datasets/loaders/multimodal, executable, docker, src/datase...
  
  Build (openproblems_neurips2021_bmmc, datasets/loaders/multimodal, executable, docker, src/datase...
  
  Build (zenodo_slidetags, datasets/loaders/spatial, executable, docker, src/datasets/loaders/spati...
  
  Build (zenodo, datasets/loaders/spatial, executable, docker, src/datasets/loaders/spatial/zenodo/...
  
  Build (tenx_visium, datasets/loaders/spatial, executable, docker, src/datasets/loaders/spatial/te...
  
  Build (openproblems_op3, datasets/loaders/scrnaseq, executable, docker, src/datasets/loaders/scrn...
  
  Build (cellxgene_census, datasets/loaders/scrnaseq, executable, docker, src/datasets/loaders/scrn...
  
  Build (cellxgene_census_from_source_h5ad, datasets/loaders/scrnaseq, executable, docker, src/data...
  
  Build (openproblems_v1, datasets/loaders/scrnaseq, executable, docker, src/datasets/loaders/scrna...
  
  Build (log_scran_pooling, datasets/normalization, executable, docker, src/datasets/normalization/...
  
  Build (atac_tfidf, datasets/normalization, executable, docker, src/datasets/normalization/atac_tf...
  
  Build (prot_clr, datasets/normalization, executable, docker, src/datasets/normalization/prot_clr/...
  
  Build (l1_sqrt, datasets/normalization, executable, docker, src/datasets/normalization/l1_sqrt/co...
  
  Build (sqrt_cp, datasets/normalization, executable, docker, src/datasets/normalization/sqrt_cp/co...
  
  Build (log_cp, datasets/normalization, executable, docker, src/datasets/normalization/log_cp/conf...
  
  Build (svd, datasets/processors, executable, docker, src/datasets/processors/svd/config.vsh.yaml,...
  
  Build (knn, datasets/processors, executable, docker, src/datasets/processors/knn/config.vsh.yaml,...
  
  Build (subsample, datasets/processors, executable, docker, src/datasets/processors/subsample/conf...
  
  Build (hvg, datasets/processors, executable, docker, src/datasets/processors/hvg/config.vsh.yaml,...
  
  Build (pca, datasets/processors, executable, docker, src/datasets/processors/pca/config.vsh.yaml,...
  
  Build (get_task_info, reporting, executable, docker, src/reporting/get_task_info/config.vsh.yaml,...
  
  Build (get_results, reporting, executable, docker, src/reporting/get_results/config.vsh.yaml, tar...
  
  Build (get_dataset_info, reporting, executable, docker, src/reporting/get_dataset_info/config.vsh...
  
  Build (generate_qc, reporting, executable, docker, src/reporting/generate_qc/config.vsh.yaml, tar...
  
  Build (get_method_info, reporting, executable, docker, src/reporting/get_method_info/config.vsh.y...
  
  Build (get_metric_info, reporting, executable, docker, src/reporting/get_metric_info/config.vsh.y...
  
  Build (render_readme, project, executable, docker, src/project/render_readme/config.vsh.yaml, tar...
  
  Build (upgrade_config, project, executable, docker, src/project/upgrade_config/config.vsh.yaml, t...
  
  Build (create_component, project, executable, docker, src/project/create_component/config.vsh.yam...
  
  Build (sync_resources, project, executable, docker, src/project/sync_resources/config.vsh.yaml, t...
  
  Build (fetch_run_work_dir, project, executable, docker, src/project/fetch_run_work_dir/config.vsh...
Run details
- Usage
- Workflow file

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