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Open Problems in Single-Cell Analysis

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https://openproblems.bio

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openproblems openproblems Public

Formalizing and benchmarking open problems in single-cell genomics

TeX 384 84
website website Public

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Showing 10 of 37 repositories

task_grn_inference Public

openproblems-bio/task_grn_inference’s past year of commit activity

Jupyter Notebook 9 MIT 3 2 (1 issue needs help) 0 Updated Aug 22, 2025
task_dimensionality_reduction Public

openproblems-bio/task_dimensionality_reduction’s past year of commit activity

Python 1 MIT 2 5 2 Updated Aug 20, 2025
task_batch_integration Public

openproblems-bio/task_batch_integration’s past year of commit activity

Python 10 MIT 9 7 19 Updated Aug 20, 2025
task_cyto_batch_integration Public

openproblems-bio/task_cyto_batch_integration’s past year of commit activity

R 2 MIT 1 11 (1 issue needs help) 3 Updated Aug 20, 2025
common_resources Public
Common resources for various benchmarks.

openproblems-bio/common_resources’s past year of commit activity

Nextflow 0 MIT 1 1 0 Updated Aug 20, 2025
task_denoising Public
Removing noise in sparse single-cell RNA-sequencing count data

openproblems-bio/task_denoising’s past year of commit activity

Python 1 MIT 3 2 1 Updated Aug 19, 2025
openproblems Public
Formalizing and benchmarking open problems in single-cell genomics

openproblems-bio/openproblems’s past year of commit activity

TeX 384 MIT 84 13 (1 issue needs help) 0 Updated Aug 19, 2025
task_differential_expression Public

openproblems-bio/task_differential_expression’s past year of commit activity

Shell 0 MIT 0 0 0 Updated Aug 19, 2025
core Public

openproblems-bio/core’s past year of commit activity

R 0 MIT 0 0 1 Updated Aug 12, 2025
task_ist_preprocessing Public

openproblems-bio/task_ist_preprocessing’s past year of commit activity

Python 7 MIT 3 8 4 Updated Aug 12, 2025

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