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Replace local Medaka module with nf-core module

enhancementNew feature or requestNew feature or request

Status: Open.

#301 In nf-core/bacass;

· Daniel-VM opened on Apr 29, 2026

·  

Release 2.7.0

Add BUSCO output to MultiQC

enhancementNew feature or requestNew feature or request

Status: Open.

#295 In nf-core/bacass;

· Daniel-VM opened on Apr 16, 2026

·  

Release 2.7.0

BadZipFile Error in download_reference.py - NCBI API returns non-ZIP data with HTTP 200

bugSomething isn't workingSomething isn't working

Status: Open.

#290 In nf-core/bacass;

· vaishnavpvarma opened on Mar 30, 2026

"busco" step failing due to publishing issues

bugSomething isn't workingSomething isn't working

Status: Open.

#289 In nf-core/bacass;

· ESapenaVentura opened on Mar 27, 2026

·  

Release 2.7.0

Add dbCAN

enhancementNew feature or requestNew feature or request

Status: Open.

#280 In nf-core/bacass;

· brovolia opened on Mar 11, 2026

Add genomad module

enhancementNew feature or requestNew feature or request

Status: Open.

#278 In nf-core/bacass;

· brovolia opened on Mar 11, 2026

Add traitar module

enhancementNew feature or requestNew feature or request

Status: Open.

#277 In nf-core/bacass;

· brovolia opened on Mar 11, 2026

Add GTDB-Tk for taxonomic info

enhancementNew feature or requestNew feature or request

Status: Open.

#274 In nf-core/bacass;

· d4straub opened on Mar 11, 2026

·  

Release 2.7.0

Make "--assembly_type" optional (change default to 'auto')

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#271 In nf-core/bacass;

· d4straub opened on Mar 2, 2026

·  

Release 2.7.0

JSON schema: Bacass

Status: Open.

#217 In nf-core/bacass;

· jen-reeve opened on Mar 25, 2025

Add nº round of polishing (racon+minimap) ONT

enhancementNew feature or requestNew feature or request

Status: Open.

#214 In nf-core/bacass;

· jimmlucas opened on Mar 24, 2025

Add genome rotation step to start chromosomes at dnaA

enhancementNew feature or requestNew feature or request

Status: Open.

#212 In nf-core/bacass;

· Daniel-VM opened on Mar 23, 2025