Add Embeddings to Study View #5224
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inodb
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Jul 7, 2025
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Add a new Embeddingstab to the Study View, which leverages deck.gl. The implementation uses a randomly generated scatter plot that represent UMAP and PCA projections. The dots can be colored by clinical attributes or tumor types, similar to the plots tab. The plot also allows for selection.
Make legend more interactive. Add embedding to more studies (anything that has a sample in the embedding).
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We've received various requests to show embeddings (e.g. UMAP/PCA) on the Study View. This implements a prototype using deckgl which can support 1M points:
See preview
Features
TODO
Get a realistic embedding (currently bogus for 24K cases)Fix driver coloring, currently everything VUS (copy plots tab style)