Add Embeddings tab to Study View

Add a new Embeddingstab to the Study View, which leverages deck.gl. The
implementation uses a randomly generated scatter plot that represent UMAP and
PCA projections. The dots can be colored by clinical attributes or tumor types,
similar to the plots tab. The plot also allows for selection.

Author: inodb

package.json

@@ -91,6 +91,10 @@
     "@babel/preset-env": "^7.4.4",
     "@babel/preset-react": "^7.0.0",
     "@datadog/browser-logs": "^5.28.0",
+    "@deck.gl/core": "^9.1.12",
+    "@deck.gl/layers": "^9.1.12",
+    "@deck.gl/react": "^9.1.12",
+    "@deck.gl/widgets": "^9.1.12",
     "@rollup/plugin-commonjs": "^22.0.0",
     "@rollup/plugin-image": "^2.1.1",
     "@rollup/plugin-json": "^4.1.0",
@@ -241,7 +245,6 @@
     "pathway-mapper": "^2.3.0",
     "pdfobject": "^2.0.201604172",
     "pegjs": "^0.10.0",
-    "plotly.js": "^1.42.5",
     "pluralize": "^7.0.0",
     "postcss-loader": "^1.2.2",
     "postcss-url": "^8.0.0",

src/data/msk_chord_2024_pca_data.json

@@ -0,0 +1,59 @@
+{
+  "studyId": "msk_chord_2024",
+  "title": "MSK-CHORD PCA Embedding Data",
+  "description": "PCA coordinates for sample of patient cases in MSK-CHORD study",
+  "totalPatients": 10,
+  "sampleSize": 10,
+  "data": [
+    {
+      "patientId": "P-0000012",
+      "x": -2.5,
+      "y": 1.8
+    },
+    {
+      "patientId": "P-0000015",
+      "x": 3.2,
+      "y": -1.4
+    },
+    {
+      "patientId": "P-0000036",
+      "x": -1.1,
+      "y": 2.7
+    },
+    {
+      "patientId": "P-0000041",
+      "x": 2.8,
+      "y": 0.5
+    },
+    {
+      "patientId": "P-0000057",
+      "x": -0.3,
+      "y": -2.1
+    },
+    {
+      "patientId": "P-0000058",
+      "x": 1.9,
+      "y": 1.2
+    },
+    {
+      "patientId": "P-0000066",
+      "x": -2.8,
+      "y": -0.7
+    },
+    {
+      "patientId": "P-0000077",
+      "x": 0.6,
+      "y": 2.3
+    },
+    {
+      "patientId": "P-0000081",
+      "x": 1.4,
+      "y": -1.8
+    },
+    {
+      "patientId": "P-0000082",
+      "x": -1.7,
+      "y": 0.9
+    }
+  ]
+}