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Taxon assignment error

Status: Open.

#361 In bacpop/PopPUNK;

· jburgaya opened on Nov 13, 2025

poppunk_assign ERROR samples are missing from the final network

Status: Open.

#360 In bacpop/PopPUNK;

· drhchen opened on Oct 11, 2025

poppunk_assign error

Status: Open.

#359 In bacpop/PopPUNK;

· zjx22018105-coder opened on Aug 27, 2025

Using pre-created kmer distances

Status: Open.

#355 In bacpop/PopPUNK;

· balags1 opened on Jul 3, 2025

missing .dists.npy

Status: Open.

#353 In bacpop/PopPUNK;

· vesa00 opened on Jun 10, 2025

segmentation fault with <code>lineage</code> model when multi-threading

Status: Open.

Bug

#352 In bacpop/PopPUNK;

· dr-joe-wirth opened on Jun 5, 2025

Samples are missing from the final network

Status: Open.

#350 In bacpop/PopPUNK;

· SerhEL opened on Apr 25, 2025

Issues with the use of poppunk_visualise

Status: Open.

#348 In bacpop/PopPUNK;

· vesa00 opened on Mar 4, 2025

_Pseudomonas aeruginosa_ database error

Status: Open.

#347 In bacpop/PopPUNK;

· erinyoung opened on Jan 29, 2025

Support all network.py functions in CPU and GPU modes

Status: Open.

#341 In bacpop/PopPUNK;

· johnlees opened on Jan 6, 2025

Question about de novo multi-species Nocardiopsis database

enhancementNew feature or requestNew feature or request

Status: Open.

#339 In bacpop/PopPUNK;

· ERBringHorvath opened on Dec 12, 2024

Add <code>--qc-keep</code> to <code>poppunk_assign</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#335 In bacpop/PopPUNK;

· DOH-JDJ0303 opened on Oct 23, 2024