EasyAmplicon 2: Expanding PacBio and Nanopore long amplicon sequencing analysis pipeline for microbiome
EasyAmplicon 1 to version 2, a pipeline fully supports third-generation full-length amplicon data. EasyAmplicon 2 is a user-friendly pipeline that includes data analysis and visualization options for data obtained from multiple sequencing technologies (Illumina, BGI, PacBio, Nanopore and Qitan). It integrates popular tools such as DADA2 and Emu, and provides a workflow from raw data to publication-ready visualizations.