Bootstrap fold bug

[tjstruck]

Summary by Sourcery

Fix handling of the polarization flag when generating bootstrap frequency spectra and bump the package patch version.

Bug Fixes:

• Ensure the polarized argument is correctly passed through to bootstrap frequency spectrum generation.

Build:

• Bump the package version from 0.9.13 to 0.9.14.

[sourcery-ai]

Reviewer's guide (collapsed on small PRs)

Reviewer's Guide

Fixes a bug in bootstrap spectrum generation by correctly passing the polarization flag to dadi’s bootstrapping helper, and bumps the package version for release.

Sequence diagram for bootstrap spectrum generation with polarized flag

sequenceDiagram
    participant User
    participant CLI as dadi_cli.GenerateFs
    participant Misc as dadi.Misc

    User->>CLI: generate_fs(dd, chunk_size, bootstrap, pop_ids, projections, polarized)
    CLI->>Misc: fragment_data_dict(dd, chunk_size)
    Misc-->>CLI: fragments
    CLI->>Misc: bootstraps_from_dd_chunks(fragments, bootstrap, pop_ids, projections, polarized=polarized)
    Misc-->>CLI: bootstrap_list
    loop for each fs in bootstrap_list
        CLI->>CLI: optional marginalize_pops and processing
    end
    CLI-->>User: bootstrap frequency_spectra

Loading

File-Level Changes

Change	Details	Files
Fix bootstrap generation to honor the polarized/unpolarized setting when creating bootstrapped frequency spectra.	Update the call to the bootstrapping helper to use a keyword argument for the polarization flag Ensure that the polarized state from generate_fs is propagated into the bootstrapped data dictionaries	dadi_cli/GenerateFs.py
Prepare a patch release for the bugfix.	Increment the project version from 0.9.13 to 0.9.14	pyproject.toml

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.13%. Comparing base (99050d9) to head (ee373f2).
⚠️ Report is 1 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #136      +/-   ##
==========================================
- Coverage   85.31%   85.13%   -0.18%     
==========================================
  Files          27       27              
  Lines        1702     1702              
==========================================
- Hits         1452     1449       -3     
- Misses        250      253       +3     

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