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chore(ci): bump codecov/codecov-action from 4 to 5 #3
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- Add testing.Short() skip handling to all Cognee capacity tests - Add testing.Short() skip handling to OpenCode config regression tests - Prevents timeout failures when running with `make test` (-short flag) Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Complete audit of 158 tasks across 7 categories - 12-phase implementation plan with detailed timelines - Identified 12 critical unfinished code items - Documented all 7 test types with commands - Listed 16 packages needing doc.go files - Mapped all website, manual, and course updates Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Replace empty TestPlaceholder with comprehensive unit tests for JSON, string ops, time, maps, slices, type assertions, and error handling - Implement security debate evaluation (EvaluateAttack, EvaluateContent) with vulnerability detection for prompt injection, jailbreak, data leak - Implement skills protocol adapter executeSkillLogic with category-based execution (code_generation, code_review, documentation, testing, etc.) Fixes critical items from completion plan Phase 1 Co-Authored-By: Claude Opus 4.5 <[email protected]>
Creates comprehensive doc.go files with GoDoc format documentation: - internal/llm: LLM provider abstractions and ensemble orchestration - internal/services: Core business logic (debate, intent, context) - internal/handlers: HTTP request handlers - internal/database: PostgreSQL data access layer - internal/plugins: Hot-reloadable plugin system - internal/tools: Tool schema registry (21 tools) - internal/agents: CLI agent registry (48 agents) - internal/security: Security framework (red team, guardrails, PII) - internal/rag: Retrieval-Augmented Generation - internal/skills: Skill framework with protocol adapters - internal/memory: Mem0-style memory management - internal/debate: AI Debate Orchestrator Framework - internal/verifier: Startup verification pipeline - internal/middleware: HTTP middleware (auth, rate limit, CORS) - internal/cache: Redis and in-memory caching - internal/background: Background task execution Phase 7 of completion plan - Package Documentation complete Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Add Train() method with full pattern analysis - Implement analyzeExamples() for pattern extraction - Add updateDimensionWeights() for weight calibration - Implement storePositiveExamples() for memory storage - Add calibrateScoring() for threshold adjustment - Handle trainingPatterns with correlations and metrics Co-Authored-By: Claude Opus 4.5 <[email protected]>
Documentation: - docs/internal/architecture.md - System architecture with diagrams - docs/database/schema.md - Complete PostgreSQL schema documentation - docs/mcp/adapters-registry.md - 45+ MCP adapters catalog - docs/guides/agentic-workflows.md - Workflow orchestration guide - docs/guides/memory-management.md - Mem0-style memory guide User Manuals (4 new): - 09-mcp-integration.md - MCP adapter usage guide - 10-security-hardening.md - Security best practices - 11-performance-tuning.md - Optimization guide - 12-plugin-development.md - Plugin creation guide Video Courses (4 new): - course-11-mcp-mastery.md - Complete MCP guide (3.5h) - course-12-advanced-workflows.md - Agentic workflows (4h) - course-13-enterprise-deployment.md - Enterprise features (3h) - course-14-certification-prep.md - Certification guide (2.5h) Code: - Implement grammar constraint validation with support for: - JSON, list, key-value, number, boolean formats - Email, URL, date pattern validation - EBNF-style grammar parsing and validation - Basic structural validation (balanced brackets) Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Document all LLMFacade service methods - Include protobuf message definitions - Add authentication examples (API key, JWT) - Document error handling with gRPC status codes - Add client connection examples with TLS - Include interceptors and retry patterns - Add performance tips (pooling, compression, keepalive) Co-Authored-By: Claude Opus 4.5 <[email protected]>
Operations Runbook: - Startup & shutdown procedures (Docker, K8s, systemd) - Health check endpoints and expected responses - Monitoring metrics and Prometheus queries - Common issues troubleshooting guide - Incident response procedures (P1-P4) - Maintenance procedures (deploys, migrations, certs) - Backup and recovery procedures - Scaling operations guide - Contact escalation matrix Development Style Guide: - Go formatting and naming conventions - Error handling patterns - Context usage guidelines - Concurrency best practices - Struct and comment guidelines - Testing conventions (table-driven tests) - Package organization - API design principles - Commit message format - Code review checklist Co-Authored-By: Claude Opus 4.5 <[email protected]>
User Manuals: - Add entries for manuals 11-14 (MCP, Security, Performance, Plugins) - Update quick links section Video Courses: - Add courses 14-17 (MCP Mastery, Agentic Workflows, Enterprise, Certification) - Update learning paths for developers and DevOps/SRE - Expand certification levels (Associate, Developer, Operator, Professional, Expert) - Update total course count to 17 Co-Authored-By: Claude Opus 4.5 <[email protected]>
Completed Items: - Code: Security debate eval, skills adapter, self-improvement training, grammar validation - 16 doc.go files for all internal packages - 8 architecture documentation files - 4 new user manuals (09-12) - 4 new video courses (11-14) - Updated README indexes Remaining Items: - LLMsVerifier provider import - Alert manager email - Database logging - Test improvements Co-Authored-By: Claude Opus 4.5 <[email protected]>
Mark completed: - Alert Manager Email (SMTP with TLS/STARTTLS support) - Database Logging (persistence with query support) - LLMsVerifier Provider Import (CreateProvider client method) Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Update submodule to include enhanced score extraction - Update completion plan with score extraction implementation Co-Authored-By: Claude Opus 4.5 <[email protected]>
- main_test.go skips are legitimate infrastructure guards - provider_autodiscovery_test.go has proper assertions Co-Authored-By: Claude Opus 4.5 <[email protected]>
All major components verified as complete: - Plugin hot-reload: fully implemented with fsnotify - gRPC methods: 16 methods implemented in cmd/grpc-server/main.go - Package documentation: all 16 doc.go files complete - Architecture documentation: all 8 docs complete - User manuals: all 12 manuals complete - Video courses: all 17 courses complete Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Update submodule with timing tracking implementation - Update completion plan with Reporter Start Time fix Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Add default logger initialization in NewDebateSecurityAdapter when nil is passed - Fix test assertion to match actual ConsensusType value (security_analysis) Co-Authored-By: Claude Opus 4.5 <[email protected]>
Phase 4 (Documentation): - Expand internal/router/README.md from 13 to 86 lines - Expand internal/sanity/README.md from 13 to 121 lines - Expand internal/testing/README.md from 13 to 142 lines - Expand internal/embeddings/README.md from 13 to 116 lines - Expand internal/lakehouse/README.md from 13 to 109 lines - Expand internal/storage/README.md from 13 to 136 lines Phase 3 (Test Coverage): - Add 20+ MCP handler tests for improved coverage - Tests for MCPToolSearch, MCPAdapterSearch, MCPToolSuggestions - Tests for MCPCategories, MCPStats endpoints - Edge case and error path coverage Part of comprehensive audit plan implementation. Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Updated generate_opencode_config() with correct OpenCode schema format
- Added generate_crush_config() with 37 MCPs
- Created verify-opencode-mcps.sh (15 tests)
- Created verify-crush-mcps.sh (10 tests)
- Created cli_agent_mcp_challenge.sh (26 tests)
- MCPs include:
- Anthropic Official: filesystem, fetch, memory, time, git, sqlite, postgres,
puppeteer, brave-search, google-maps, slack, sequential-thinking, everart,
exa, linear, sentry, notion, figma, aws-kb-retrieval, gitlab
- HelixAgent Custom: helixagent, helixagent-debate, helixagent-rag, helixagent-memory
- Community: docker, kubernetes, redis, mongodb, elasticsearch, qdrant, chroma,
jira, asana, google-drive, aws-s3, datadog
Co-Authored-By: Claude Opus 4.5 <[email protected]>
- Added cli_agent_mcp_challenge.sh to Challenges System section - Added CLI Agent MCP Configuration section with 37 MCPs table - Documented verification scripts for OpenCode and Crush Co-Authored-By: Claude Opus 4.5 <[email protected]>
…rics - Integrate LLM provider registry into ProtocolSkillAdapter for real code generation - Add Prometheus metrics for formatters system (requests, duration, cache) - Implement computeLineChanges for accurate formatting statistics - Improve DNS discoverer test with IP address handling - Update Administration Guide with scaling and high availability section - Replace TODO comments with proper implementations in formatters factory
- Fix HTTP response body closures with safe defer patterns - Handle JSON unmarshal errors in database repositories - Fix transaction rollback error handling - Address cache operation error handling - Improve JSON marshal error checking in background tasks - Maintain test stability across all modified packages
… in test files; downgrade x/crypto to v0.46.0
….Reader.Close; downgrade go version to 1.24.1
…les; remove temporary scripts
…tandards Reduce CLAUDE.md from ~1450 to ~238 lines (84% reduction) by removing reference documentation (curl examples, JSON responses, port tables, config blocks, ASCII diagrams) that belongs in docs/. Add all 10 mandatory development standards from AGENTS.md, git/SSH rules, code style guidelines, CI/CD validation, and infrastructure/monitoring commands. Co-Authored-By: Claude Opus 4.5 <[email protected]>
- config: update TestAllEndpoints expected count from 13 to 18 for new services (zookeeper, clickhouse, minio, spark_master, spark_worker) - formatters/service: return wrapped error from Format() json.Unmarshal failure so test assertion on "failed to parse response" succeeds - claude: consume sync.Once in CLI unavailability tests to prevent IsCLIAvailable() from re-checking and finding installed CLI - qwen: add testing.Short() guard to integration tests that hang when qwen CLI is installed but ACP connection is unavailable Co-Authored-By: Claude Opus 4.5 <[email protected]>
…x protocol adapter comments
- Fix ~3000 errcheck lint violations across 283 files (production + test code)
- Add MemoryEnabled config field (default: true) to decouple from Cognee
- Update memory service guard to check MemoryEnabled flag
- Add 3 new memory service tests (EnabledByDefault, Mem0Fallback, MemoryDisabled)
- Fix misleading "placeholder" comments in skills protocol adapter
- All production code uses proper error handling or explicit _ = for intentionally ignored errors
- All test code uses _ = or _, _ = for unchecked returns
- defer calls with error returns wrapped in func() { _ = expr }()
Co-Authored-By: Claude Opus 4.5 <[email protected]>
…ata, formatters, database, memory, observability Add comprehensive test suites for 8 packages that were previously untested or had low coverage: - analytics: 0% -> 80.6% (22 tests, go-sqlmock with custom sliceValueConverter) - conversation: 0% -> 91.5% (45+ tests across 3 files) - learning: 0% -> 93.7% (45 tests for InsightStore and CrossSessionLearner) - bigdata: 2.9% -> 84.9% (231 tests across 10 files, mock S3 server) - formatters: 15.5% -> 93.0% (148 tests across 11 files) - database: 52.5% -> 69.8% (nil-pool panic recovery pattern for pgx) - memory: 41% -> 96.5% (CRDT, event sourcing, distributed manager) - observability: ~65% -> 84.5% (70 tests, concurrency, context cancellation) Co-Authored-By: Claude Opus 4.5 <[email protected]>
…utdown - Replace O(n) cache eviction in QueryCache with O(1) LRU using container/list doubly-linked list. Get/Set/Evict all now O(1). Benchmarks: ~900ns/op Set with eviction, ~350ns/op Get. - Add bounded concurrency (semaphore, max 10) for formatter health checks in FormatterRegistry.HealthCheckAll to prevent unbounded goroutine creation with 46+ formatters. - Add per-component timeout (10s) in BigDataIntegration.Stop for knowledge graph streaming and ClickHouse connection close to prevent indefinite blocking during shutdown. - Add 30s timeout to formatters System.Shutdown to prevent hanging. - Add LRU eviction behavior tests and cache benchmarks. - All packages pass race detector with zero races detected. Co-Authored-By: Claude Opus 4.5 <[email protected]>
…finding - Create .snyk policy file for Snyk vulnerability scanner configuration - Create scripts/generate-sbom.sh for Software Bill of Materials generation supporting syft (CycloneDX + SPDX) and cyclonedx-gomod, with go mod fallback when tools are not installed - Add `make sbom` target to Makefile - Fix last remaining HIGH severity gosec finding (G404) in concurrency_alert_manager.go with nosec annotation (jitter for backoff timing is not security-sensitive) - All existing security scanners (gosec, trivy, snyk, sonarqube) remain fully configured via docker-compose.security.yml Co-Authored-By: Claude Opus 4.5 <[email protected]>
…llenge scripts - Add stress tests for bigdata (5 tests), formatters (5 tests), memory (4 tests) - Add gRPC integration tests (21 tests covering all service methods) - Add debate full flow integration tests (7 tests with lifecycle coverage) - Add formatters cache benchmarks (4 benchmarks) - Add memory CRDT benchmarks (9 benchmarks) - Add challenge scripts: grpc_service, bigdata_comprehensive, memory_system, security_scanning Co-Authored-By: Claude Opus 4.5 <[email protected]>
…grams Add documentation for analytics, bigdata, conversation, formatters, and learning packages. Create user manuals for BigData integration, gRPC API, memory system, and code formatters. Add video courses for BigData analytics and memory management. Create Mermaid diagrams for gRPC service and memory system architecture. Update CLAUDE.md and AGENTS.md with new challenge scripts and test references. Co-Authored-By: Claude Opus 4.5 <[email protected]>
Add v1.1.0 changelog entry documenting Phases 1-6 remediation work. Add 4 new feature cards to features page (BigData, gRPC, Memory, Security). Add 4 new doc cards to index page linking to new documentation. Create 4 new documentation pages: bigdata.html, grpc.html, memory.html, security.html with comprehensive guides for each subsystem. Co-Authored-By: Claude Opus 4.5 <[email protected]>
Build mock-llm-server with CGO_ENABLED=0 and static linking flags, removing the ca-certificates dependency that fails when Alpine mirrors are unreachable. Co-Authored-By: Claude Opus 4.5 <[email protected]>
- handlers: fix non-deterministic map iteration in TestDebateToolCallsIntegration - tools: fix error message mismatch (invalid→unknown action) in PR/Issue/Workflow handlers - verifier: add test mode for quality validation, fix pure score-based ranking - services: fix type assertion through circuitBreakerProvider wrapper - qwen: fix ACP availability testing, mock init, streaming context cancellation - cognee: add integration build tag, fix API endpoints, add auth handling - cmd/helixagent: mock postgres/redis health checkers in mock-based tests, add connectivity pre-checks in integration tests - qwen_acp: fix 3 errcheck violations in deferred cleanup Co-Authored-By: Claude Opus 4.5 <[email protected]>
The run_all_challenges.sh script had a 30s timeout waiting for HelixAgent to start, but the LLMsVerifier provider verification pipeline makes real API calls to all 29 discovered providers and takes ~120s. Increased to 180s to accommodate the full startup sequence. Also adds .env service configuration for remote service boot (prevents BootManager from recreating containers with different port mappings) and updates challenge master summary with all 50 challenges passing. Co-Authored-By: Claude Opus 4.5 <[email protected]>
…modules Add two new generic, reusable Go modules as git submodules: - Containers (digital.vasic.containers): container orchestration with Docker/Podman/K8s runtime abstraction, health checking, compose orchestration, lifecycle management, and monitoring (12 packages) - Challenges (digital.vasic.challenges): challenge framework with assertion engine, registry, runner, reporting, logging, monitoring, plugin system, and infrastructure bridge (12 packages) Create internal/challenges package bridging the generic modules with HelixAgent-specific implementations: plugin, infra provider, provider verification, debate formation, API quality challenges, and shell adapter. Update go.mod with module dependencies and replace directives. Update CLAUDE.md with module documentation. Co-Authored-By: Claude Opus 4.5 <[email protected]>
Phase 1: Concurrency Fixes - Fix race condition in TestConcurrencyAlertManager_WebhookDelivery - Fix race condition in metrics reset with RWMutex protection - Fix deadlock in Qwen ACP startProcess() - Fix race on isRunning in Qwen ACP sendRequest() Phase 2: Test Infrastructure - Add 600+ new tests across 6 packages - Add benchmark tests for auth, vectordb, routing, storage - Achieve 73-99% coverage on previously untested packages Phase 3: Challenge Scripts - Add 18 new challenge scripts (stress, security, db, providers) - Total challenge scripts now: 189 Phase 4: Security Scanning Pipeline - Add CI/CD security workflow (.github/workflows/security.yml) - Add Dependabot configuration - Add pre-commit hooks, hadolint, yamllint configs - Create SECURITY.md policy document Phase 5: Documentation - Add 27 new README files for internal packages - Add docs directory index READMEs (11 directories) Phase 6: User Guides and Website - Add video course materials (4 files) - Add website documentation (10 files) - Add Level 5 certification quiz Phase 7: Performance Optimizations - Add circuit breaker listener management (RemoveListener, max limit) - Add worker pool overflow tracking and notification Phase 8: Final Validation - Create RELEASE_CHECKLIST.md - All tests pass, build validated Co-Authored-By: Claude Opus 4.5 <[email protected]>
Background Worker Pool: - Add thread-safe worker state accessors with atomic operations - Add mutex protection for currentTask and lastActivity fields - Add stopOnce to prevent double-close panic on stopChan - Add atomic flag for stopChan closure tracking Ensemble Service: - Fix goroutine leak in stream draining with WaitGroup - Add context awareness to prevent indefinite blocking - Properly track and wait for drain goroutines Documentation: - Add docs/MODULES.md with module catalog - Add internal/storage/minio/README.md - Add internal/vectordb/milvus/README.md Co-Authored-By: Claude Opus 4.5 <[email protected]>
Update CLAUDE.md to document the complete module extraction: - Phase 1 (Foundation): EventBus, Concurrency, Observability, Auth, Storage, Streaming - Phase 2 (Infrastructure): Security, VectorDB, Embeddings, Database, Cache - Phase 3 (Services): Messaging, Formatters, MCP - Phase 4 (Integration): RAG, Memory, Optimization, Plugins - Pre-existing: Containers, Challenges Each module is an independent Go module with tests, documentation, and CLAUDE.md. Co-Authored-By: Claude Opus 4.5 <[email protected]>
Add 18 independent Go modules as submodules: Phase 1 (Foundation): - EventBus (digital.vasic.eventbus) - Pub/sub event system - Concurrency (digital.vasic.concurrency) - Worker pools, rate limiters, circuit breakers - Observability (digital.vasic.observability) - Tracing, metrics, logging - Auth (digital.vasic.auth) - JWT, API key, OAuth authentication - Storage (digital.vasic.storage) - Object storage abstraction - Streaming (digital.vasic.streaming) - SSE, WebSocket, gRPC streaming Phase 2 (Infrastructure): - Security (digital.vasic.security) - Guardrails, PII detection - VectorDB (digital.vasic.vectordb) - Vector store adapters - Embeddings (digital.vasic.embeddings) - Embedding providers - Database (digital.vasic.database) - PostgreSQL, SQLite - Cache (digital.vasic.cache) - Redis, in-memory caching Phase 3 (Services): - Messaging (digital.vasic.messaging) - Kafka, RabbitMQ - Formatters (digital.vasic.formatters) - Code formatting - MCP_Module (digital.vasic.mcp) - Model Context Protocol Phase 4 (Integration): - RAG (digital.vasic.rag) - Retrieval-Augmented Generation - Memory (digital.vasic.memory) - Mem0-style memory - Optimization (digital.vasic.optimization) - GPT-Cache, Outlines - Plugins (digital.vasic.plugins) - Plugin system Also adds: - go.mod replace directives for local development - VectorDB READMEs and comprehensive tests Co-Authored-By: Claude Opus 4.5 <[email protected]>
Document the 8-phase completion plan that was executed: - Part 1: Critical issues inventory (skipped tests, concurrency issues) - Part 2: Test coverage gaps analysis - Part 3: Documentation gaps - Part 4: Security scanning requirements - Part 5: Performance optimization needs This report served as the roadmap for the completion work. Co-Authored-By: Claude Opus 4.5 <[email protected]>
Updated submodules to latest commits: - Auth: add comprehensive documentation - Cache: add docs, improve redis test coverage with miniredis - Concurrency: add docs - Database: add docs, fix flaky pool test - Embeddings: add docs - EventBus: add docs - Formatters: add docs - MCP_Module: add docs, fix race conditions in client/server - Memory: add docs - Messaging: add docs - Observability: add docs, improve analytics test coverage with sqlmock - Optimization: add docs - Plugins: add docs, improve loader test coverage - RAG: add docs - Security: add docs - Storage: add docs, improve S3 test coverage - Streaming: add docs, achieve 100% grpc/sse coverage - VectorDB: add docs All modules now include: - AGENTS.md for multi-agent coordination - docs/USER_GUIDE.md with usage examples - docs/ARCHITECTURE.md with design decisions - docs/API_REFERENCE.md with public API documentation - Mermaid diagrams for architecture visualization Test validation: 18 modules, 96 packages, 1873 tests - ALL PASSING Co-Authored-By: Claude Opus 4.5 <[email protected]>
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4 to 5. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](codecov/codecov-action@v4...v5) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]>
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Bumps codecov/codecov-action from 4 to 5.
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671740achore(release): 5.5.2 (#1902)96b38e9chore:disable_searchalignment (#1881)9b6d1f8check gpg only when skip-validation = false (#1894)5a10915chore(release): 5.5.1 (#1873)3e0ce21fix: overwrite pr number on fork (#1871)c4741c8build(deps): bump actions/checkout from 4.2.2 to 5.0.0 (#1868)17370e8build(deps): bump github/codeql-action from 3.29.9 to 3.29.11 (#1867)18fdacffix: update to use local app/ dir (#1872)206148cdocs: fix typo in README (#1866)3cb13a1Document acodecov-cliversion reference example (#1774)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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