Release v1.2.6

Changed

• only one scRNA-seq index generation rule is loaded per run

Fixed

• downloading of gene annotation from NCBI (updated genomepy to 0.16.4)
• raise a descriptive error if the specified aligner/quantifier is incorrect
• raise a descriptive error if the gene annotation is required, but is not found locally, and cannot be downloaded
• integration test for rna-seq
• error message when SRA is down
• rule multiqc_explain now works with compound binary CLI arguments (e.g. -rk)
• rule motif2factors (updated to gimmemotifs 0.18.4 + orthofinder 3.1.5)

Release v1.2.5

Fixed

• pinned setuptools for the pkg_resources module (warning)

Release v1.2.4

Fixed

• updated genomepy version (works with all providers again)
• fixed chipseeker warnings
• fixed upsetplot warnings

Release v1.2.3

Fixed

• replaced older conda version with newer conda version, seems to install packages again
• new chipseeker env

Release v1.2.2

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Release v1.2.1

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Release v1.2.0

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Release v1.1.0

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Release v1.0.4

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Release v1.0.3

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.