trilinos · trilinos-autotester · Nov 25, 2025 · Jul 30, 2025 · Jul 30, 2025 · Aug 5, 2025
diff --git a/.github/workflows/per-commit.yml b/.github/workflows/per-commit.yml
@@ -21,18 +21,3 @@ jobs:
         $GITHUB_WORKSPACE/commonTools/test/utilities/check-commit-signoffs.sh \
         origin/${{ github.event.pull_request.base.ref }} \
         ${{ github.event.pull_request.head.sha }}
-
-  no-modifying-deprecated-packages:
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Check out code
-      uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0
-      with:
-        fetch-depth: 0
-
-    - name: Search for signoff statements in commit messages
-      run: |
-        $GITHUB_WORKSPACE/commonTools/test/utilities/check-not-modify-legacy-packages.sh \
-        origin/${{ github.event.pull_request.base.ref }} \
-        ${{ github.event.pull_request.head.sha }}
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -17,11 +17,6 @@ PROJECT(${PROJECT_NAME} NONE)
 # Set up to use ccache
 include("${CMAKE_CURRENT_LIST_DIR}/cmake/UseCCache.cmake")
 
-set(DEPRECATED_PACKAGES Amesos AztecOO Epetra EpetraExt Ifpack Intrepid Isorropia ML NewPackage Pliris PyTrilinos ShyLU_DDCore ThyraEpetraAdapters ThyraEpetraExtAdapters Triutils)
-FOREACH(package ${DEPRECATED_PACKAGES})
-  set(${package}_DISABLE_STRONG_WARNINGS ON CACHE BOOL "Disable strong compile warnings for ${package}" FORCE)
-ENDFOREACH()
-
 # Set an env so we know we are in configure
 set(ENV{CMAKE_IS_IN_CONFIGURE_MODE} 1)
 
@@ -61,30 +56,4 @@ IF(${PROJECT_NAME}_ENABLE_YouCompleteMe)
   INCLUDE(CodeCompletion)
 ENDIF()
 
-set(enabled_deprecated_packages "")
-FOREACH(package ${DEPRECATED_PACKAGES})
-  IF(Trilinos_ENABLE_${package})
-    set(enabled_deprecated_packages ${package} ${enabled_deprecated_packages})
-  ENDIF()
-ENDFOREACH()
-
-IF(enabled_deprecated_packages)
-  message("********************************************************************")
-  message("********  WARNING WARNING WARNING WARNING WARNING WARNING  *********")
-  message("********************************************************************")
-  message("* Several Trilinos packages are scheduled for deprecation in 2025.")
-  message("* The following deprecated packages are enabled (either explicitly")
-  message("* or implicitly due to a dependency)")
-  message("*")
-  string(REPLACE ";" "\n*    " p "${enabled_deprecated_packages}")
-  message("*    ${p}")
-  message("*")
-  message("********************************************************************")
-  message("")
-  message(WARNING "Deprecated packages that are enabled: ${enabled_deprecated_packages}")
-  IF(Trilinos_HIDE_DEPRECATED_CODE)
-    message(FATAL_ERROR "Trilinos cannot be built with deprecated code hidden if any deprecated packages are enabled!")
-  ENDIF()
-ENDIF()
-
 message(STATUS "If publishing results using Trilinos, please cite us: https://trilinos.github.io/cite.html")
diff --git a/PackagesList.cmake b/PackagesList.cmake
@@ -11,7 +11,6 @@ TRIBITS_REPOSITORY_DEFINE_PACKAGES(
   RTOp                  packages/rtop                     PT
   Sacado                packages/sacado                   PT
   MiniTensor            packages/minitensor               PT
-  Epetra                packages/epetra                   ST
   SCOREClion            SCOREC/lion                       ST
   SCORECpcu             SCOREC/pcu                        ST
   SCORECgmi             SCOREC/gmi                        ST
@@ -24,34 +23,21 @@ TRIBITS_REPOSITORY_DEFINE_PACKAGES(
   AvatarT               packages/avatart                  EX
   Zoltan                packages/zoltan                   PT
   Shards                packages/shards                   PT
-  Triutils              packages/triutils                 ST
-  EpetraExt             packages/epetraext                ST
   Tpetra                packages/tpetra                   PT
   TrilinosSS            packages/common/auxiliarySoftware/SuiteSparse PT # Auxiliary software.
-  Domi                  packages/domi                     PT
   Thyra                 packages/thyra                    PT
   Xpetra                packages/xpetra                   PT
-  Isorropia             packages/isorropia                ST
-  Pliris                packages/pliris                   ST
-  AztecOO               packages/aztecoo                  ST
   Galeri                packages/galeri                   PT
-  Amesos                packages/amesos                   ST
   Pamgen                packages/pamgen                   PT
   Zoltan2Core           packages/zoltan2/core             PT
-  Ifpack                packages/ifpack                   ST
-  ML                    packages/ml                       ST
   Belos                 packages/belos                    PT
   ShyLU_Node            packages/shylu/shylu_node         PT
   Amesos2               packages/amesos2                  PT
   SEACAS                packages/seacas                   PT # Depends on netcdf, optionally hdf5, xdmf, pamgen
-  Komplex               packages/komplex                  ST
   Anasazi               packages/anasazi                  PT
   Ifpack2               packages/ifpack2                  PT
   Stratimikos           packages/stratimikos              PT
-  FEI                   packages/fei                      PT
   Teko                  packages/teko                     PT
-  TriKota               packages/TriKota                  ST
-  Intrepid              packages/intrepid                 ST
   Intrepid2             packages/intrepid2                PT
   Compadre              packages/compadre                 ST
   STK                   packages/stk                      PT # Depends on boost
@@ -64,14 +50,12 @@ TRIBITS_REPOSITORY_DEFINE_PACKAGES(
   SCOREC                SCOREC                            ST
   Phalanx               packages/phalanx                  PT
   NOX                   packages/nox                      PT
-  Moertel               packages/moertel                  ST
   MueLu                 packages/muelu                    PT
   TrilinosLinearSolvers packages/trilinos_linear_solvers  PT
   Zoltan2Sphynx         packages/zoltan2/sphynx           PT
   Zoltan2               packages/zoltan2                  PT
   ShyLU_DD              packages/shylu/shylu_dd           PT
   ShyLU                 packages/shylu                    PT
-  Rythmos               packages/rythmos                  PT
   Tempus                packages/tempus                   PT
   MOOCHO                packages/moocho                   ST
   Stokhos               packages/stokhos                  PT
@@ -81,14 +65,11 @@ TRIBITS_REPOSITORY_DEFINE_PACKAGES(
   UMR                   packages/umr                      ST
   Panzer                packages/panzer                   PT
   CTrilinos             packages/CTrilinos                ST # Switched to ST to speed up checkin testing
-  PyTrilinos            packages/PyTrilinos               ST
   PyTrilinos2           packages/PyTrilinos2              EX
   WebTrilinos           packages/WebTrilinos              EX # Should be ST
-  NewPackage            packages/new_package              EX # Should be ST
   Optika		packages/optika		          EX
   Adelus                packages/adelus                   PT
   TrilinosCouplings     packages/trilinoscouplings        PT
-  Pike                  packages/pike                     PT
   xSDKTrilinos          packages/xSDKTrilinos             ST
   TrilinosBuildStats    commonTools/build_stats           PT
   TrilinosInstallTests  packages/TrilinosInstallTests     PT
@@ -122,15 +103,6 @@ TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(SGM)
 TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(UMR)
 TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(TrilinosLinearSolvers)
 
-# TRILFRAME-500
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(Rythmos)    # 27115 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(Pike)       # 27048 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(Komplex)    # 27030 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(Moertel)    # 26995 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(TriKota)    # 26995 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(Domi)       # 26946 targets
-TRIBITS_ALLOW_MISSING_EXTERNAL_PACKAGES(FEI)
-
 #
 # Disable certain packages on certain platforms.
 #

diff --git a/cmake-dependencies-scrubber.py b/cmake-dependencies-scrubber.py
@@ -0,0 +1,50 @@
+import os
+import re
+
+def remove_words_from_sets(text, words_to_remove):
+    # Create a regex pattern to match the SET commands
+    pattern = r'SET\(([^)]+)\)'
+
+    def replace_function(match):
+        # Extract the current list of packages
+        current_packages = match.group(1)
+        # Split the packages into a list and remove unwanted words
+        packages = current_packages.split()
+        filtered_packages = [pkg for pkg in packages if pkg not in words_to_remove]
+        # Join the filtered packages back into a string
+        return f'SET({" ".join(filtered_packages)})'
+
+    # Use re.sub to replace all SET commands with the filtered lists
+    modified_text = re.sub(pattern, replace_function, text)
+    return modified_text
+
+def process_file(file_path, words_to_remove):
+    # Read the content of the file
+    with open(file_path, 'r') as file:
+        content = file.read()
+
+    # Remove specified words from the SET commands
+    modified_content = remove_words_from_sets(content, words_to_remove)
+
+    # Write the modified content back to the file
+    with open(file_path, 'w') as file:
+        file.write(modified_content)
+
+def find_and_process_files(directory, words_to_remove):
+    # Walk through the directory to find all Dependencies.cmake files
+    for root, dirs, files in os.walk(directory):
+        for file in files:
+            if file == 'Dependencies.cmake':
+                file_path = os.path.join(root, file)
+                print(f"Processing file: {file_path}")
+                process_file(file_path, words_to_remove)
+
+
+if __name__ == "__main__":
+    # Specify the directory to search
+    target_directory = os.getcwd()
+    # Define the list of words to remove
+    words_to_remove = ['Amesos', 'AztecOO', 'Epetra', 'EpetraExt', 'Ifpack', 'Intrepid', 'Isorropia', 'ML', 'NewPackage', 'Pliris', 'PyTrilinos', 'ShyLU_DDCore', 'ThyraEpetraAdapters', 'ThyraEpetraExtAdapters', 'Triutils']
+
+    # Find and process all Dependencies.cmake files
+    find_and_process_files(target_directory, words_to_remove)
diff --git a/cmake/ProjectCompilerPostConfig.cmake b/cmake/ProjectCompilerPostConfig.cmake
@@ -1,14 +1,6 @@
 tribits_get_package_enable_status(Kokkos  KokkosEnable "")
 
 
-macro(disable_warnings_for_deprecated_packages)
-    message(STATUS "Disabling all warnings/errors for deprecated packages")
-    foreach(package ${DEPRECATED_PACKAGES})
-        set(${package}_CXX_FLAGS "-w ${${package}_CXX_FLAGS}")
-    endforeach()
-endmacro()
-
-
 macro(enable_warnings warnings)
     message(STATUS "Trilinos warnings enabled: ${warnings}")
     foreach(warning ${warnings})
@@ -211,14 +203,27 @@ if("${Trilinos_WARNINGS_MODE}" STREQUAL "WARN")
     enable_warnings("${upcoming_warnings}")
     filter_valid_warnings_as_errors("${promoted_warnings}" promoted_warnings)
     enable_errors("${promoted_warnings}")
-    disable_warnings_for_deprecated_packages()
 elseif("${Trilinos_WARNINGS_MODE}" STREQUAL "ERROR")
     filter_valid_warnings_as_errors("${promoted_warnings}" promoted_warnings)
     filter_valid_warnings_as_errors("${upcoming_warnings}" upcoming_warnings)
     enable_errors("${promoted_warnings};${upcoming_warnings}")
-    disable_warnings_for_deprecated_packages()
 endif()
 
 if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
     disable_warnings("${explicitly_disabled_warnings}")
 endif()
+
+
+# Make sure that all deprecated packages are forcefully disabled (and that the variables controlling enablement are defined)
+macro(force_disable_package packageName)
+    tribits_filter_package_list_from_var(Trilinos_DEFINED_PACKAGES INTERNAL ON NONEMPTY packageSublist)
+    set(Trilinos_ENABLE_${packageName} OFF CACHE BOOL "Enable ${packageName} (special setting for force-disable, should ALWAYS be `OFF`)")
+    foreach(package ${packageSublist})
+        set(${package}_ENABLE_${packageName} OFF CACHE BOOL "Enable ${packageName} support in ${package} (special setting for force-disable, should ALWAYS be `OFF`)")
+    endforeach()
+endmacro()
+
+set(DEPRECATED_PACKAGES Amesos AztecOO Epetra EpetraExt Ifpack Intrepid Isorropia ML NewPackage Pliris PyTrilinos ShyLU_DDCore ThyraEpetraAdapters ThyraEpetraExtAdapters Triutils)
+FOREACH(package ${DEPRECATED_PACKAGES})
+  force_disable_package(${package})
+ENDFOREACH()
diff --git a/commonTools/framework/CMakeLists.txt b/commonTools/framework/CMakeLists.txt
@@ -133,7 +133,7 @@ ENDFUNCTION()
 
 
 set(ALL_TOPLEVEL_PACKAGES_REGEX
-  "TrilinosFrameworkTests TrilinosATDMConfigTests .*Kokkos Teuchos KokkosKernels .*EpetraExt Tpetra .*Thyra .*SEACAS .*Teko Intrepid .*MueLu .*ShyLU_DD ShyLU .*Tempus Stokhos ROL Piro Panzer Adelus TrilinosCouplings TrilinosBuildStats TrilinosInstallTests")
+  "TrilinosFrameworkTests TrilinosATDMConfigTests .*Kokkos Teuchos KokkosKernels .*Tpetra .*Thyra .*SEACAS .*Teko .*MueLu .*ShyLU_DD ShyLU .*Tempus Stokhos ROL .*Panzer Adelus TrilinosCouplings TrilinosBuildStats TrilinosInstallTests")
 
 create_get_changed_trilinos_packages_test(ProjectsList_TeuchosCore
   "ProjectsList.cmake\npackages/teuchos/core/CMakeLists.txt"
@@ -153,27 +153,27 @@ create_get_changed_trilinos_packages_test(ProjectsList_TeuchosCore
   # want to list too many packages above in the regex.
 
 
-create_get_changed_trilinos_packages_test(cmake_std_atdm_TeuchosCore_PyTrilinos_Pliris
-  "cmake/std/atdm/anything\npackages/teuchos/core/CMakeLists.txt\npackages/PyTrilinos/anything\npackages/pliris/CMakeLists.txt"
-  "TrilinosATDMConfigTests,TeuchosCore,PyTrilinos,Pliris"
-  "TrilinosATDMConfigTests,TeuchosCore,Pliris"
-  "Setting Trilinos_ENABLE_TrilinosATDMConfigTests = ON;Setting Trilinos_ENABLE_TeuchosCore = ON;Setting Trilinos_ENABLE_Pliris = ON"
+create_get_changed_trilinos_packages_test(cmake_std_atdm_TeuchosCore_PyTrilinos_Compadre
+  "cmake/std/atdm/anything\npackages/teuchos/core/CMakeLists.txt\npackages/PyTrilinos/anything\npackages/compadre/CMakeLists.txt"
+  "TrilinosATDMConfigTests,TeuchosCore,Compadre"
+  "TrilinosATDMConfigTests,TeuchosCore,Compadre"
+  "Setting Trilinos_ENABLE_TrilinosATDMConfigTests = ON;Setting Trilinos_ENABLE_TeuchosCore = ON;Setting Trilinos_ENABLE_Compadre = ON"
   "${ALL_TOPLEVEL_PACKAGES_REGEX}"
   )
   # The above test ensures that cmake/std/atdm/ changes don't trigger global
-  # builds and it makes sure that PT (TeuchosCore) and ST packages (Pliris) do
+  # builds and it makes sure that PT (TeuchosCore) and ST packages (Compadre) do
   # get enabled (but excluded ST package PyTrilinos does not get included).
 
 
-create_get_changed_trilinos_packages_test(TeuchosCore_NewPackage_Pliris
-  "packages/teuchos/core/CMakeLists.txt\npackages/new_package/anything\npackages/pliris/a.txt"
-  "TeuchosCore,NewPackage,Pliris"
-  "TeuchosCore,Pliris"
-  "Setting Trilinos_ENABLE_TeuchosCore = ON;Setting Trilinos_ENABLE_Pliris = ON"
+create_get_changed_trilinos_packages_test(TeuchosCore_PyTrilinos2_Compadre
+  "packages/teuchos/core/CMakeLists.txt\npackages/PyTrilinos2/anything\npackages/compadre/a.txt"
+  "TeuchosCore,PyTrilinos2,Compadre"
+  "TeuchosCore,Compadre"
+  "Setting Trilinos_ENABLE_TeuchosCore = ON;Setting Trilinos_ENABLE_Compadre = ON"
   "${ALL_TOPLEVEL_PACKAGES_REGEX}"
   )
-  # The above test ensures PT (TeuchosCore) and ST packages (Piro) do get
-  # enabled but EX packages (NewPackage) don't.
+  # The above test ensures PT (TeuchosCore) and ST packages (Compadre) do get
+  # enabled but EX packages (PyTrilinos2) don't.
 
 
 create_get_changed_trilinos_packages_test(cmake_std_atdm

diff --git a/commonTools/framework/get-changed-trilinos-packages-helpers-unit-tests.sh b/commonTools/framework/get-changed-trilinos-packages-helpers-unit-tests.sh
@@ -139,8 +139,7 @@ test_trilinos_filter_packages_to_test() {
   assertContains "${all_toplevel_packages}" ",TrilinosATDMConfigTests,"
   assertContains "${all_toplevel_packages}" ",Teuchos,"
   assertContains "${all_toplevel_packages}" ",Tpetra,"
-  assertContains "${all_toplevel_packages}" ",PyTrilinos,"
-  assertContains "${all_toplevel_packages}" ",NewPackage,"
+  assertContains "${all_toplevel_packages}" ",PyTrilinos2,"
   assertContains "${all_toplevel_packages}" ",Panzer,"
 
 }