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Add SILVA v138.2 database information to README #104

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kdcurry merged 2 commits into from
Jan 16, 2026
Merged

Add SILVA v138.2 database information to README #104

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Add SILVA v138.2 database information to README
kdcurry Jan 16, 2026
7cf10ff
Fix formatting of SILVA v138.1 database entry
kdcurry Jan 16, 2026
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -168,6 +168,7 @@ Our pre-built databases and files\scripts used to construct the databases are st
| :------- | :----- |
|[RDP v11.5](https://rdp.cme.msu.edu/) with NCBI taxonomy has been pre-built for Emu v3.0+. | `export EMU_PREBUILT_DB='rdp'`|
|[SILVA v138.1](https://www.arb-silva.de/) has been pre-built for Emu v3.0+ from the [DADA2 SILVA species-level database](https://zenodo.org/record/4587955#.YvqmSezMLOQ).| `export EMU_PREBUILT_DB='silva'`|
|[SILVA v138.2](https://www.arb-silva.de/) has been built courtesy of @maddne. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='silva-138.2'`|
|[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 fungi](https://dx.doi.org/10.15156/BIO/1280049) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-fungi'`|
|[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 all eukaryotes](https://dx.doi.org/10.15156/BIO/1280127) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-all'`|

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