source files for OBA (Ontology of Biological Attributes)

Internationalisation of the HPO content

Crossmapped phenotype ontologies for the oncology domain

Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase

Scripts, data files and ontologies for the FLOPO project

Package to serve public and freely-available data from rare disease patients.

HPO archive of the ontology and annotations

Bayesian ontology querying from Bauer et al.

Small program to query OMIM and store output in a local sqlite database.

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

Website for the Phenomics and Machine Learning Team

Python library to work with HPO (Human Phenotype Ontology) terms and their gene/disease associations

Code to generate ontology annotated objects (e.g. HPO annotated patients)

Exploratory Research -- Clustering Similar Patients by Phenotype

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi

IDeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype

HPO web browser created with Vaadin

GUI to build and modify Phenotype Algorithm Specification Ontologies

The QC software for the OWL version of HPO (only text-checks, not so much logic included)