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  • Run unit tests: ./runTests.py src/test/unit
  • Run cpplint: make cpplint
  • Declare copyright holder and open-source license: see below

Summary

Closes #3351

Intended Effect

More size mismatch errors are properly caught by Stan

How to Verify

New test added, which crashes on develop and passes on this branch.

Side Effects

Documentation

Copyright and Licensing

Please list the copyright holder for the work you are submitting (this will be you or your assignee, such as a university or company):

Simons Foundation

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@WardBrian WardBrian requested a review from SteveBronder August 7, 2025 17:10
Comment on lines 794 to 797
// If we've made it this far, we need x to have elements to assign to,
// and we know this is either a no-op or x has size 0
x.resize(y.size());
if constexpr (std::is_rvalue_reference_v<U&&>) {
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If we are trying to fix the case of the below does this do what we intend?

parameters {
  array[1] vector[1] theta;
}
transformed parameters {
  array[1] vector[2] wrong_size;
  wrong_size = theta;
}

idt we want to resize wrong_size here. Shouldn't this throw an error?

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The first part of this function checks the sizes match if x is not size 0, and will throw an exception.

So, when this line executes it is guaranteed that x.size == y.size OR x.size == 0. If the sizes match, this resize does nothing.

But if x was size 0, and we can’t just directly assign to it, we need to resize it or else x[i] will blow up in the following loop

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In particular, this is the test I added, and the test still asserts that this throws an error, it just no longer crashes.

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Name Old Result New Result Ratio Performance change( 1 - new / old )
eight_schools/eight_schools.stan 0.06 0.06 1.05 4.76% faster
pkpd/one_comp_mm_elim_abs.stan 19.8 19.76 1.0 0.18% faster
pkpd/sim_one_comp_mm_elim_abs.stan 0.25 0.25 0.98 -1.86% slower
arK/arK.stan 1.81 1.84 0.99 -1.42% slower
gp_pois_regr/gp_pois_regr.stan 2.87 2.86 1.0 0.33% faster
gp_regr/gen_gp_data.stan 0.02 0.02 1.01 1.21% faster
gp_regr/gp_regr.stan 0.09 0.1 0.94 -6.94% slower
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan 8.88 8.86 1.0 0.19% faster
low_dim_gauss_mix/low_dim_gauss_mix.stan 2.8 2.73 1.03 2.62% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan 0.01 0.01 0.98 -1.85% slower
garch/garch.stan 0.43 0.42 1.01 1.2% faster
arma/arma.stan 0.34 0.32 1.08 7.22% faster
irt_2pl/irt_2pl.stan 4.18 4.14 1.01 0.76% faster
sir/sir.stan 70.37 72.23 0.97 -2.64% slower
performance.compilation 196.04 188.26 1.04 3.97% faster
Mean result: 1.0062622888251802

Jenkins Console Log
Blue Ocean
Commit hash: e775f450bb86eacc0a0443dbaf4a36bc3407e56f


Machine information No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 20.04.3 LTS Release: 20.04 Codename: focal

CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 46 bits physical, 48 bits virtual
CPU(s): 80
On-line CPU(s) list: 0-79
Thread(s) per core: 2
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
Stepping: 4
CPU MHz: 2400.000
CPU max MHz: 3700.0000
CPU min MHz: 1000.0000
BogoMIPS: 4800.00
Virtualization: VT-x
L1d cache: 1.3 MiB
L1i cache: 1.3 MiB
L2 cache: 40 MiB
L3 cache: 55 MiB
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79
Vulnerability Gather data sampling: Mitigation; Microcode
Vulnerability Itlb multihit: KVM: Mitigation: Split huge pages
Vulnerability L1tf: Mitigation; PTE Inversion; VMX conditional cache flushes, SMT vulnerable
Vulnerability Mds: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Meltdown: Mitigation; PTI
Vulnerability Mmio stale data: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed: Mitigation; IBRS
Vulnerability Spec rstack overflow: Not affected
Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; IBRS; IBPB conditional; STIBP conditional; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT vulnerable
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single pti intel_ppin ssbd mba ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke md_clear flush_l1d arch_capabilities

G++:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Clang:
clang version 10.0.0-4ubuntu1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/bin

@WardBrian WardBrian requested a review from SteveBronder August 8, 2025 14:03
@stan-buildbot
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Name Old Result New Result Ratio Performance change( 1 - new / old )
eight_schools/eight_schools.stan 0.1 0.06 1.68 40.5% faster
pkpd/one_comp_mm_elim_abs.stan 20.19 20.83 0.97 -3.17% slower
pkpd/sim_one_comp_mm_elim_abs.stan 0.26 0.27 0.93 -7.25% slower
arK/arK.stan 1.89 1.86 1.02 2.05% faster
gp_pois_regr/gp_pois_regr.stan 2.93 2.91 1.01 0.94% faster
gp_regr/gen_gp_data.stan 0.03 0.03 1.06 5.68% faster
gp_regr/gp_regr.stan 0.1 0.1 0.98 -1.89% slower
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan 9.09 9.18 0.99 -0.96% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan 2.84 2.91 0.98 -2.23% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan 0.01 0.01 0.91 -9.77% slower
garch/garch.stan 0.45 0.46 0.98 -1.7% slower
arma/arma.stan 0.35 0.33 1.03 3.05% faster
irt_2pl/irt_2pl.stan 4.4 4.46 0.99 -1.49% slower
sir/sir.stan 72.15 72.55 0.99 -0.55% slower
performance.compilation 195.75 206.14 0.95 -5.3% slower
Mean result: 1.0318800538794621

Jenkins Console Log
Blue Ocean
Commit hash: e775f450bb86eacc0a0443dbaf4a36bc3407e56f


Machine information No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 20.04.3 LTS Release: 20.04 Codename: focal

CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 46 bits physical, 48 bits virtual
CPU(s): 80
On-line CPU(s) list: 0-79
Thread(s) per core: 2
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
Stepping: 4
CPU MHz: 2400.000
CPU max MHz: 3700.0000
CPU min MHz: 1000.0000
BogoMIPS: 4800.00
Virtualization: VT-x
L1d cache: 1.3 MiB
L1i cache: 1.3 MiB
L2 cache: 40 MiB
L3 cache: 55 MiB
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79
Vulnerability Gather data sampling: Mitigation; Microcode
Vulnerability Itlb multihit: KVM: Mitigation: Split huge pages
Vulnerability L1tf: Mitigation; PTE Inversion; VMX conditional cache flushes, SMT vulnerable
Vulnerability Mds: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Meltdown: Mitigation; PTI
Vulnerability Mmio stale data: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed: Mitigation; IBRS
Vulnerability Spec rstack overflow: Not affected
Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; IBRS; IBPB conditional; STIBP conditional; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT vulnerable
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single pti intel_ppin ssbd mba ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke md_clear flush_l1d arch_capabilities

G++:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Clang:
clang version 10.0.0-4ubuntu1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/bin

@WardBrian WardBrian merged commit 99a5b9d into develop Aug 11, 2025
3 checks passed
@WardBrian WardBrian deleted the fix/3351-indexing-checks-vector-of-eigen branch August 11, 2025 15:34
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Assign not properly checking bounds on arrays of Eigen objects
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