Issues

• publish wheels to PyPI alongside the sdist

  single-cell-genetics/vireo#126 · Filter by author govinda-kamath opened on Oct 15, 2026

• Column descriptions for donor_ids.tsv

  single-cell-genetics/vireo#124 · Filter by author george-hall-ucl opened on Apr 1, 2026
  1

• ValueError: could not convert string to float: '.'

  single-cell-genetics/vireo#123 · Filter by author JTnmn2000 opened on Feb 11, 2026

• undertsanding vireo outputs and visualizing heatmaps better

  single-cell-genetics/vireo#121 · Filter by author oshiomah1 opened on Nov 10, 2025
  2

• Max number of pooled samples

  single-cell-genetics/vireo#120 · Filter by author RicardoMartins-Ferreira opened on Jul 15, 2025
  3

• Ambient RNA estimation

  single-cell-genetics/vireo#119 · Filter by author bpuzek opened on Jun 30, 2025
  1

• Does providing a number of expected donors force vireo to find that many donors?

  single-cell-genetics/vireo#118 · Filter by author LilianaLucca opened on Jun 4, 2025
  4

• Probabilities not adding up to 1, and missing doublet-columns in prob_doublet.tsv.gz

  single-cell-genetics/vireo#114 · Filter by author koefoeden opened on Mar 5, 2025
  4

• Large number of unassigned

  single-cell-genetics/vireo#110 · Filter by author Run2309 opened on Nov 14, 2024

• Synthetic Bams -- High Disconcordance Rate

  single-cell-genetics/vireo#109 · Filter by author marcus-tutert opened on Oct 10, 2024

• updated release for 0.5.8

  single-cell-genetics/vireo#107 · Filter by author chouellaine opened on Aug 23, 2024
  1

• Why those cells are unassigned?

  single-cell-genetics/vireo#106 · Filter by author tewengtong opened on Jul 30, 2024
  3

• VCFfiles: seperated or merged

  single-cell-genetics/vireo#105 · Filter by author hsymoon opened on Jul 19, 2024
  2

• ValueError: column index exceeds matrix dimensions

  single-cell-genetics/vireo#104 · Filter by author hsymoon opened on Jul 8, 2024
  3

• Error: require the same format for all variants.

  single-cell-genetics/vireo#102 · Filter by author hsymoon opened on Jun 4, 2024
  1

• Most cells are unassigned and a few of them do not match the filters

  single-cell-genetics/vireo#99 · Filter by author txemaheredia opened on Apr 16, 2024
  7

• A large number of cells are unassigned & very few n_vars

  single-cell-genetics/vireo#96 · Filter by author nansne opened on Apr 3, 2024
  3

• Demultiplexing multiomic sequencing data

  single-cell-genetics/vireo#95 · Filter by author DHelix opened on Apr 1, 2024
  2

• ELBO metric when running vireo from the command line?

  single-cell-genetics/vireo#93 · Filter by author jamesnemesh opened on Mar 21, 2024

• Discriminative variants with GTbarcode

  single-cell-genetics/vireo#92 · Filter by author flde opened on Mar 4, 2024
  4

• Beneficial to pool .bam files from seperate 10x single-cell lanes instead of demultilplexing seperately?

  single-cell-genetics/vireo#89 · Filter by author koefoeden opened on Nov 14, 2023
  7

• Inferring consensus genotype for N=1

  single-cell-genetics/vireo#87 · Filter by author Ngort opened on Sep 7, 2023

• Subsetting donor VCF file for Vireo strategy 2

  single-cell-genetics/vireo#85 · Filter by author lucygarner opened on Jun 5, 2023
  3

• ValueError: could not convert string to float: '.'

  single-cell-genetics/vireo#84 · Filter by author algarnham opened on May 11, 2023
  1

• Error when running vireo mode 2 with option -N 1

  single-cell-genetics/vireo#83 · Filter by author calebthomas259 opened on Apr 11, 2023
  1