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877d0f5
init working version with pytest.
selmanozleyen Sep 9, 2025
5bd9f52
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 9, 2025
25da71a
naive implementation
selmanozleyen Sep 9, 2025
5115d65
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 9, 2025
64c166d
error from merge
selmanozleyen Sep 9, 2025
20cdf58
integrate more tests
selmanozleyen Sep 9, 2025
ee1ecfc
save state with temporary scripts. now there is a reference code to i…
selmanozleyen Sep 9, 2025
28cc06f
vibe codded version + the version I simplied. it works roughly
selmanozleyen Sep 9, 2025
4df0982
changes
selmanozleyen Sep 10, 2025
33d3fc1
simplify kernels and create a separate file
selmanozleyen Sep 10, 2025
a8b016b
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 10, 2025
9323bfe
move to float64 for precision.
selmanozleyen Sep 10, 2025
2150b0a
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 10, 2025
7faef57
bootstrapping
selmanozleyen Sep 10, 2025
fb10db6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 10, 2025
6b7d7b2
swich to f32
selmanozleyen Sep 10, 2025
3bbf06a
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 10, 2025
7a3c003
refactor
selmanozleyen Sep 28, 2025
ecfc5cf
push working state
selmanozleyen Oct 1, 2025
5783261
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 1, 2025
0496af0
add documentation and write a comparison script
selmanozleyen Oct 16, 2025
a7cf6c4
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 16, 2025
8df093f
Merge branch 'main' into feature/pertpy-edistance
selmanozleyen Oct 16, 2025
21ed12c
Merge branch 'main' into feature/pertpy-edistance
Intron7 Oct 24, 2025
63e6e83
speed up kernel
Intron7 Oct 24, 2025
ea67712
Merge branch 'main' into feature/pertpy-edistance
selmanozleyen Nov 7, 2025
ae31919
Merge branch 'main' into feature/pertpy-edistance
selmanozleyen Nov 12, 2025
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2 changes: 1 addition & 1 deletion src/rapids_singlecell/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

import cuml.internals.logger as logger

from . import dcg, get, gr, pp, tl
from . import dcg, get, gr, pp, ptg, tl
from ._version import __version__

logger.set_level(2)
3 changes: 3 additions & 0 deletions src/rapids_singlecell/pertpy_gpu/__init__.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
from __future__ import annotations

from ._edistance import pertpy_edistance
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