Name		Name	Last commit message	Last commit date
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.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
build.sh		build.sh
config.json.sample		config.json.sample
manifest.json		manifest.json
run		run
run_docker.sh		run_docker.sh

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app-mrtrix3-preproc

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mrtrix3preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data

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