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Download pipeline skips a container #54

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#56
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Download pipeline skips a container#54
#56
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bugSomething isn't working

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@levje
levje
opened on Dec 19, 2025

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nf-core pipelines download scilus/sf-tractomics -r dev -s singularity -l docker.io -d 4 -x none -u copy --force

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  1. levje
    added
    bugSomething isn't working
    on Dec 19, 2025
  2. levje
    assigned
    levje
    and unassigned
    levje
    on Dec 19, 2025

  3. gagnonanthony commented on Dec 19, 2025

    @gagnonanthony
    gagnonanthony
    on Dec 19, 2025
    Member

    Which version of nf-core are you using? They completely rewrote their download command to use nextflow inspect instead of a regex pattern. This should fix your issue.

  4. levje commented on Jan 1, 2026

    @levje
    levje
    on Jan 1, 2026
    CollaboratorAuthor

    I was using the nf-core==3.2.0 since the template of the pipeline depends on it. Might be a good idea to update the template too.

  5. levje
    linked a pull request that will close this issueENH: Update dev to template #56on Jan 14, 2026
  6. arnaudbore
    closed this as completedon Jan 20, 2026
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