[WIP] Allow modular loading of datasets

.Rbuildignore

@@ -1,2 +1,3 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
+^.*\.h5Seurat$

.gitignore

@@ -2,3 +2,4 @@
 .Rhistory
 .RData
 .Ruserdata
+*.h5Seurat

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: SeuratData
 Type: Package
 Title: Install and Manage Seurat Datasets
-Version: 0.1.0
+Version: 0.1.0.9001
 Date: 2019-07-17
 Authors@R: c(
   person(given = 'Rahul', family = 'Satija', email = '[email protected]', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
@@ -21,8 +21,15 @@ RoxygenNote: 6.1.1
 Imports:
     cli,
     crayon,
+    methods,
+    Seurat (>= 3.0.2),
+    rappdirs,
     stats,
+    tools,
     utils
-Collate: 
+Collate:
     'zzz.R'
+    'h5seurat.R'
     'seurat_data.R'
+Suggests:
+    hdf5r (>= 1.2.0)

NAMESPACE

@@ -1,10 +1,52 @@
 # Generated by roxygen2: do not edit by hand
 
+S3method(AppendData,H5File)
+S3method(AppendData,character)
+S3method(IndexH5Seurat,H5File)
+S3method(IndexH5Seurat,character)
+S3method(LoadH5Seurat,H5File)
+S3method(LoadH5Seurat,character)
+S3method(SaveH5Seurat,Seurat)
+S3method(SaveH5Seurat,default)
+S3method(as.list,H5Group)
+S3method(print,h5SI)
+export(AppendData)
 export(AvailableData)
+export(IndexH5Seurat)
 export(InstallData)
 export(InstalledData)
+export(LoadData)
+export(LoadH5Seurat)
 export(RemoveData)
+export(SaveH5Seurat)
 export(UpdateData)
+importFrom(Seurat,"Idents<-")
+importFrom(Seurat,"Key<-")
+importFrom(Seurat,"Misc<-")
+importFrom(Seurat,"Project<-")
+importFrom(Seurat,"VariableFeatures<-")
+importFrom(Seurat,AddMetaData)
+importFrom(Seurat,Assays)
+importFrom(Seurat,Command)
+importFrom(Seurat,CreateAssayObject)
+importFrom(Seurat,CreateDimReducObject)
+importFrom(Seurat,DefaultAssay)
+importFrom(Seurat,Embeddings)
+importFrom(Seurat,GetAssayData)
+importFrom(Seurat,Idents)
+importFrom(Seurat,JS)
+importFrom(Seurat,Key)
+importFrom(Seurat,Loadings)
+importFrom(Seurat,Misc)
+importFrom(Seurat,Project)
+importFrom(Seurat,Reductions)
+importFrom(Seurat,SetAssayData)
+importFrom(Seurat,Stdev)
+importFrom(Seurat,Tool)
+importFrom(Seurat,VariableFeatures)
+importFrom(Seurat,as.Graph)
+importFrom(Seurat,as.Seurat)
+importFrom(Seurat,as.sparse)
 importFrom(cli,rule)
 importFrom(cli,symbol)
 importFrom(crayon,blue)
@@ -14,8 +56,15 @@ importFrom(crayon,col_nchar)
 importFrom(crayon,green)
 importFrom(crayon,red)
 importFrom(crayon,yellow)
+importFrom(methods,"slot<-")
+importFrom(methods,new)
+importFrom(methods,slot)
+importFrom(methods,slotNames)
+importFrom(rappdirs,user_data_dir)
 importFrom(stats,na.omit)
+importFrom(tools,file_ext)
 importFrom(utils,available.packages)
+importFrom(utils,data)
 importFrom(utils,install.packages)
 importFrom(utils,packageVersion)
 importFrom(utils,remove.packages)