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Track upstream changes of forked modules

questionFurther information is requestedFurther information is requested

Status: Open.

#245 In sanger-tol/nf-core-modules;

· muffato opened on Jun 3, 2026

TABIX_BGZIPTABIX is deprecated

Status: Open.

Bug

#240 In sanger-tol/nf-core-modules;

· muffato opened on May 28, 2026

Ideas for a setup workflow

questionFurther information is requestedFurther information is requested

Status: Open.

Feature

#221 In sanger-tol/nf-core-modules;

· muffato opened on Apr 21, 2026

new subworkflow: quickmap_cov

Status: Open.

#217 In sanger-tol/nf-core-modules;

· yumisims opened on Apr 14, 2026

Ideas for a sanger-tol Nextflow plugin

questionFurther information is requestedFurther information is requested

Status: Open.

#208 In sanger-tol/nf-core-modules;

· muffato opened on Mar 17, 2026

new subworkflow: CONTACT_MAPS_INGEST_TRACKS

Status: Open.

#205 In sanger-tol/nf-core-modules;

· DLBPointon opened on Mar 12, 2026

Changes for genome_statistics

Status: Open.

#174 In sanger-tol/nf-core-modules;

· prototaxites opened on Feb 10, 2026

update module: ancestral/plot

Status: Open.

#171 In sanger-tol/nf-core-modules;

· DLBPointon opened on Feb 9, 2026

update module: ancestral/extract

Status: Open.

#170 In sanger-tol/nf-core-modules;

· DLBPointon opened on Feb 9, 2026

[FEATURE] Allow alignment of Illumina reads in cram_align_illumina_hic with minimap2

Status: Open.

#150 In sanger-tol/nf-core-modules;

· sainsachiko opened on Jan 15, 2026

Add READ_COVERAGE to nf-core-modules

Status: Open.

#78 In sanger-tol/nf-core-modules;

· weaglesBio opened on Oct 3, 2025

New chunked mapping subworkflows

Status: Open.

#74 In sanger-tol/nf-core-modules;

· prototaxites opened on Oct 1, 2025