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Data Transformation Pipeline:

This code implements ETL (Extract, Transform, Load) logic to convert data from multiple common data models—PEDSnet, ACT/i2b2, PCORnet, and TriNetX—into the OMOP Common Data Model (CDM) version 5.3.1. It harmonizes source-specific schemas, terminologies, and data conventions into a unified OMOP-compliant structure.

Licensing Requirements

Apache 2.0 NOTICE This software and its associated mapping files were developed initially by the National COVID Cohort Collaborative (N3C) academic development team under NIH grant U24TR002306) A National Center for Digital Health Informatics Innovation (CD2H). Enhancements and refinements were made by the same team under a variety of federally funded programs.

Members of this team included:

  • University of North Carolina at Chapel Hill: Melissa Haendel, Emily Pfaff, Anita Walden, Sofia Dard, Samyuktha Nandhakumar, Meredith Abrams, Chris Roeder, Bryan Laraway, Julie McMurray, Shawn O' Neil
  • Emory University: Richard Moffitt, Jason Yoo, Margaret Hall
  • Johns Hopkins University: Christopher Chute, Stephanie Hong, Tanner Zhang, Davera Gabriel, Tricia Francis

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