Update nix flake inputs structure and add rv-nix-tools to dependency update workflow
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This pull request adapts the nix flake inputs structure regarding
nixpkgsandrv-nix-tools. In particular,nixpkgsis now specified for inputs and transitive inputs by following an explicitly specified revision ofrv-nix-tools. More thorough reasoning for this change is outlined in documentation added by this PR runtimeverification/rv-nix-tools#14. This change is done to makenixpkgsproperly updatable by CI.In addition, this pull requests adapts the
update-deps.ymlworkflow to also updaterv-nix-toolsthat is used to implicitly specify the revision ofnixpkgs.