CellProjectedPhenotypes_ManuscriptAnalysis

Analysis scripts associated with "Cell-projected phenotypes link transcriptional and phenotypic heterogeneity in Alzheimer’s disease", by Mangan et al.

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
CrossCohortPredictions		CrossCohortPredictions
DEG_TxSubgroups		DEG_TxSubgroups
Metabolic_Modelling_Analysis		Metabolic_Modelling_Analysis
.gitignore		.gitignore
000 utils.r		000 utils.r
0011_FigureS1.r		0011_FigureS1.r
001_Figure_1abc.r		001_Figure_1abc.r
002_Figure_1d.r		002_Figure_1d.r
003 Healthy_astrocytes_in_AD_donors.r		003 Healthy_astrocytes_in_AD_donors.r
004 Figure_2a.r		004 Figure_2a.r
005 Figure_2b_and_S4.r		005 Figure_2b_and_S4.r
006_TS_00_metabolite_preprocessing_script.R		006_TS_00_metabolite_preprocessing_script.R
007_01_subgroup_clusters_20260311.R		007_01_subgroup_clusters_20260311.R
008.AD_subtyping.R		008.AD_subtyping.R
LICENSE		LICENSE
README.md		README.md
TS_02_subgroup_DEG_analysis.R		TS_02_subgroup_DEG_analysis.R
TS_03_cell-level-gene-expression-heatmap.R		TS_03_cell-level-gene-expression-heatmap.R
TS_04_superneighborhood-creation.R		TS_04_superneighborhood-creation.R
TS_05_downstream_SN_analysis.R		TS_05_downstream_SN_analysis.R
TS_05_downstream_SN_analysis_Riley_Fixes.R		TS_05_downstream_SN_analysis_Riley_Fixes.R
TS_06_sex_ident.R		TS_06_sex_ident.R

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