Skip to content

Automatic update of ENA Sample Checklists #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
github-actions wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Automatic update of ENA Sample Checklists #1

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 6 additions & 0 deletions ena_upload/templates/ENA_template_samples_ERC000036.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,12 @@ def attributetest(row, column):
<TAG>investigation type</TAG>
<VALUE>${row['investigation type']}</VALUE>
</SAMPLE_ATTRIBUTE>
<py:if test="attributetest(row, 'surveillance target')">
<SAMPLE_ATTRIBUTE>
<TAG>surveillance target</TAG>
<VALUE>${row['surveillance target']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<SAMPLE_ATTRIBUTE>
<TAG>collection date</TAG>
<VALUE>${row['collection date']}</VALUE>
Expand Down
12 changes: 12 additions & 0 deletions ena_upload/templates/ENA_template_samples_ERC000053.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -128,6 +128,18 @@ def attributetest(row, column):
<VALUE>${row['sample symbiont of']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'sample coordinator')">
<SAMPLE_ATTRIBUTE>
<TAG>sample coordinator</TAG>
<VALUE>${row['sample coordinator']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'sample coordinator affiliation')">
<SAMPLE_ATTRIBUTE>
<TAG>sample coordinator affiliation</TAG>
<VALUE>${row['sample coordinator affiliation']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<SAMPLE_ATTRIBUTE>
<TAG>sex</TAG>
<VALUE>${row['sex']}</VALUE>
Expand Down