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73 changes: 57 additions & 16 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -1,34 +1,75 @@
FROM mcr.microsoft.com/devcontainers/cpp:dev-ubuntu-22.04
# First Stage: Builder
FROM mcr.microsoft.com/devcontainers/cpp:dev-ubuntu-22.04 AS builder

ARG REINSTALL_CMAKE_VERSION_FROM_SOURCE="none"

# Optionally install the cmake for vcpkg
# Optionally install CMake for vcpkg
COPY ./reinstall-cmake.sh /tmp/

RUN if [ "${REINSTALL_CMAKE_VERSION_FROM_SOURCE}" != "none" ]; then \
chmod +x /tmp/reinstall-cmake.sh && /tmp/reinstall-cmake.sh ${REINSTALL_CMAKE_VERSION_FROM_SOURCE}; \
fi \
&& rm -f /tmp/reinstall-cmake.sh

RUN sed -i.bak "/^#.*deb-src.*universe$/s/^# //g" /etc/apt/sources.list \
&& apt -y update \
&& apt install -y --no-install-recommends \
# Enable deb-src for dependencies
RUN sed -i.bak "/^#.*deb-src.*universe$/s/^# //g" /etc/apt/sources.list && apt update

# Install necessary build dependencies
RUN apt install -y --no-install-recommends \
software-properties-common \
subversion \
&& add-apt-repository --enable-source --yes "ppa:marutter/rrutter4.0" \
&& wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \
wget \
gpg \
build-essential \
gfortran \
libxml2-dev \
libcurl4-openssl-dev \
libssl-dev \
libblas-dev \
liblapack-dev

# Add R repository and install R
RUN add-apt-repository --enable-source --yes "ppa:marutter/rrutter4.0" \
&& wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \
&& apt update \
&& apt -y build-dep r-base-dev \
&& apt -y install r-base-dev \
&& Rscript -e "install.packages('languageserver', repos='https://cran.rstudio.com')" \
&& Rscript -e "install.packages('httpgd', repos='https://cran.rstudio.com')" \
&& rm -rf /var/lib/apt/lists/*
&& apt -y install r-base-dev

RUN apt install shellcheck
RUN apt install -y ccache
#RUN /usr/sbin/update-ccache-symlinks
#RUN echo 'export PATH="/usr/lib/ccache:$PATH"' | tee -a /home/vscode/.bashrc
# Install R packages
RUN Rscript -e "install.packages('languageserver', repos='https://cran.rstudio.com')" \
&& Rscript -e "install.packages('httpgd', repos='https://cran.rstudio.com')"

# Install shellcheck and ccache
RUN apt install -y shellcheck ccache

# Second Stage: Final Image
FROM mcr.microsoft.com/devcontainers/cpp:dev-ubuntu-22.04 AS final

ARG CONTAINER_VERSION
ENV CONTAINER_VERSION ${CONTAINER_VERSION}
ENV CONTAINER_VERSION=${CONTAINER_VERSION}

# Install minimal runtime dependencies
RUN apt update && apt install -y --no-install-recommends \
libxml2 \
libcurl4-openssl-dev \
libssl-dev \
libblas-dev \
liblapack-dev \
gfortran

# Copy R installation from builder stage
COPY --from=builder /usr/lib/R /usr/lib/R
COPY --from=builder /usr/bin/R /usr/bin/R
COPY --from=builder /usr/local/lib/R /usr/local/lib/R
COPY --from=builder /usr/share/R /usr/share/R
COPY --from=builder /etc/R /etc/R

# Copy shared libraries
COPY --from=builder /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu

# Set environment variables
ENV PATH="/usr/lib/R/bin:$PATH"
ENV LD_LIBRARY_PATH="/usr/lib/R/lib:/usr/lib/x86_64-linux-gnu"

# Verify installation
RUN ldconfig && R --version