docs: add Doxygen API documentation for calculations and analysis headers (PR 7/10)#419

Merged

wojdyr merged 20 commits into

project-gemmi:masterfrom

CV-GPhL:api-docs/calculations

Apr 23, 2026

Commits on Apr 22, 2026

docs: add Doxygen/Breathe infrastructure for C++ API reference

C. Vonrhein
authored and
C. Vonrhein
committed
fix(conf.py): guard doxygen call — skip gracefully when not installed

C. Vonrhein
authored and
C. Vonrhein
committed
ci: add docs-build job (Doxygen + Sphinx/Breathe HTML)

authored and
C. Vonrhein
committed
docs(calculate.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(align.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs: fix spec gaps in calculate.hpp and align.hpp

authored and
C. Vonrhein
committed
docs(neighbor.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(contact.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(assembly.hpp): add full Doxygen API documentation

C. Vonrhein
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C. Vonrhein
committed
docs(select.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
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docs: fix missing @brief tag on ChainNameGenerator in assembly.hpp

authored and
C. Vonrhein
committed
docs(modify.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(polyheur.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(sfcalc.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(ecalc.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(scaling.hpp): add full Doxygen API documentation

C. Vonrhein
authored and
C. Vonrhein
committed
docs(dssp.hpp): add full Doxygen API documentation

authored and
C. Vonrhein
committed
docs(api.rst): add Calculations and Analysis + Structure Factor sections (PR 7)

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docs: add Doxygen API documentation for calculations and analysis headers (PR 7/10)#419

docs: add Doxygen API documentation for calculations and analysis headers (PR 7/10)#419
wojdyr merged 20 commits into
project-gemmi:masterfrom
CV-GPhL:api-docs/calculations

Commits on Apr 22, 2026

docs: add Doxygen/Breathe infrastructure for C++ API reference

fix(conf.py): guard doxygen call — skip gracefully when not installed

ci: add docs-build job (Doxygen + Sphinx/Breathe HTML)

docs(calculate.hpp): add full Doxygen API documentation

docs(align.hpp): add full Doxygen API documentation

docs: fix spec gaps in calculate.hpp and align.hpp

docs(neighbor.hpp): add full Doxygen API documentation

docs(contact.hpp): add full Doxygen API documentation

docs(assembly.hpp): add full Doxygen API documentation

docs(select.hpp): add full Doxygen API documentation

docs: fix missing @brief tag on ChainNameGenerator in assembly.hpp

docs(modify.hpp): add full Doxygen API documentation

docs(polyheur.hpp): add full Doxygen API documentation

docs(sfcalc.hpp): add full Doxygen API documentation

docs(ecalc.hpp): add full Doxygen API documentation

docs(scaling.hpp): add full Doxygen API documentation

docs(dssp.hpp): add full Doxygen API documentation

docs(api.rst): add Calculations and Analysis + Structure Factor sections (PR 7)

Commits on Apr 23, 2026

docs: add @par References citations to calculations headers

Merge branch 'master' into api-docs/calculations