Document advanced options introduction history

[Copilot]

Traced git history to determine when advanced options were added to the webserver.

Findings

Advanced options were present in the initial import (commit 525e293, 2019-05-14) from the antiSMASH runsmash Bitbucket repository. All three parameters have remained unchanged since:

• cdh_cutoff (default: 0.5) - CD-HIT clustering threshold
• min_domain (default: 2) - Minimum unique domain count
• coexpress_mad (default: unset) - MAD cutoff for CoExpress analysis

Documentation

Created ADVANCED_OPTIONS_HISTORY.md containing:

• Initial commit details and author attribution
• Complete timeline of 16 commits to new.html (none modified advanced options)
• Backend implementation in views.py and models.py
• Historical context from antiSMASH project

Original prompt

find when I introduced change in the advanced options

---

💬 We'd love your input! Share your thoughts on Copilot coding agent in our 2 minute survey.