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Fix the background null model: the sampler was discarding the tail it measures
tests
#343:
Pull request
#164
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4m 22s
fix/2026-08-05-vignette-recapitulation
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Fix the background null model: the sampler was discarding the tail it measures
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Fix the background null model: the sampler was discarding the tail it measures
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Fix the background null model: the sampler was discarding the tail it measures
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docs(cherimoya): fill in missing README + attribution references
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docs(cherimoya): fill in missing README + attribution references
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perf: reuse Triton's autotune result across Cherimoya calls (2.7x on every prediction after the first)
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Fix the background null model: the sampler was discarding the tail it measures
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Fix the background null model: the sampler was discarding the tail it measures
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Anchor every oracle's effect null on the regions its assay measures (…
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Anchor every oracle's effect null on the regions its assay measures
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Anchor every oracle's effect null on the regions its assay measures
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fix/2026-08-04-per-layer-region-sets
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Stage sampling in the last three builders, and drop the xfail that tr…
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Stage sampling in the last three builders, and drop the xfail that tracked them
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#330:
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3m 55s
fix/2026-08-04-staged-sampling-remainder
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Fix #133: rerender_examples.py points at the real directory, and refu…
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Fix #133: rerender_examples.py points at the real directory, and refuses to degrade
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fix/2026-08-04-rerender-refuse-degrade
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Rebuild three backgrounds on gene-anchored regions, verify end to end…
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Rebuild three backgrounds on gene-anchored regions, verify end to end, and fix four defects found while verifying
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fix/2026-08-04-rebuild-verification
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docs: resume.md — the rebuild is in flight, and three of my claims we…
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docs: resume.md — the rebuild is in flight, and three of my claims were wrong
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docs/2026-08-03-resume-update
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feat: NPZ provenance survives a merge, so a background describes itse…
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feat: NPZ provenance survives a merge, so a background describes itself (#124)
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#322:
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feat/2026-08-03-npz-provenance
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feat: gene-anchored + per-gene RNA for borzoi and enformer too (#83, …
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feat: AlphaGenome's effect background samples gene-anchored positions…
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feat: gene-anchored + per-gene RNA for borzoi and enformer too (#83, #144 inst. 3)
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feat/2026-08-03-wire-borzoi-enformer
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