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Park Lab at Harvard Medical School

31 followers
Boston, MA
http://compbio.hms.harvard.edu

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nozzle nozzle Public

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

R 68 21
NGSCheckMate NGSCheckMate Public

Software program for checking sample matching for NGS data

Python 132 55
SigMA SigMA Public

Mutational signature analysis for low statistics SNV data

R 63 21

Repositories

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Showing 10 of 42 repositories

parklab.github.io Public

parklab/parklab.github.io’s past year of commit activity

HTML 0 1 0 1 Updated Jun 20, 2025
SCAN2 Public
SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

parklab/SCAN2’s past year of commit activity

Python 12 6 12 0 Updated Jun 19, 2025
xTea Public
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

parklab/xTea’s past year of commit activity

Python 113 22 8 2 Updated Jun 11, 2025
r-scan2 Public
R package supporting the SCAN2 pipeline

parklab/r-scan2’s past year of commit activity

R 0 4 1 0 Updated Jun 8, 2025
NMF_jointMU Public

parklab/NMF_jointMU’s past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated May 29, 2025
HiScanner Public

parklab/HiScanner’s past year of commit activity

C 7 MIT 1 2 0 Updated Apr 4, 2025
hiscanner_demo Public

parklab/hiscanner_demo’s past year of commit activity

2 MIT 0 1 0 Updated Feb 8, 2025
NanoSeq_parkLab Public Forked from cancerit/NanoSeq
Analysis software for Nanorate Sequencing (NanoSeq) experiments -- forked over from Sanger Institute

parklab/NanoSeq_parkLab’s past year of commit activity

C++ 0 AGPL-3.0 13 0 0 Updated Jan 15, 2025
bamsnap Public

parklab/bamsnap’s past year of commit activity

HTML 122 MIT 27 20 0 Updated Nov 8, 2024
SPECIFICANCER_data Public

parklab/SPECIFICANCER_data’s past year of commit activity

JavaScript 0 MIT 0 0 0 Updated Sep 20, 2024

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