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    14 repositories

    • SNAP

      Public
      Single cell neighborhood map (SNAP)
      R
      •0•1•0•0•Updated Mar 11, 2025Mar 11, 2025

    • drug-resistance

      Public
      R
      •
      GNU General Public License v3.0
      •2•10•0•0•Updated Aug 24, 2024Aug 24, 2024

    • TRIPs

      Public
      Jupyter Notebook
      •
      MIT License
      •4•4•0•1•Updated Sep 5, 2023Sep 5, 2023

    • GBS_placenta

      Public
      MATLAB
      •1•1•0•0•Updated Jan 25, 2023Jan 25, 2023

    • GBS_placenta2

      Public
      MATLAB
      •1•0•0•0•Updated Nov 3, 2022Nov 3, 2022

    • knn-smoothing

      Public
      K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
      Python
      •13•60•2•1•Updated Aug 30, 2022Aug 30, 2022

    • Pathcourse

      Public
      MATLAB
      •1•0•0•0•Updated Aug 19, 2022Aug 19, 2022

    • PanCancer

      Public
      Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com/:f:/g/personal/dalia_barkl…
      R
      •5•31•5•0•Updated Aug 17, 2022Aug 17, 2022

    • APA-Seq

      Public
      MATLAB
      •0•0•0•0•Updated Apr 17, 2020Apr 17, 2020

    • enhance-R

      Public
      ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)
      R
      •2•6•2•0•Updated Jun 12, 2019Jun 12, 2019

    • enhance

      Public
      ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
      Python
      •2•15•1•0•Updated Jun 5, 2019Jun 5, 2019

    • moana

      Public
      Moana: Robust cell type classification of single-cell RNA-Seq data
      Python
      •5•24•3•0•Updated Nov 8, 2018Nov 8, 2018

    • celseq2

      Public
      Generate the UMI count matrix from CEL-Seq2 sequencing data
      snakemakebioinformatics-pipelinesingle-cell-rna-seq
      snakemakebioinformatics-pipelinesingle-cell-rna-seqcel-seq2spatial-transcriptomicsumi-count-matrix
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•19•9•0•Updated Oct 12, 2018Oct 12, 2018

    • CEL-Seq-pipeline

      Public
      Python
      •
      GNU General Public License v3.0
      •12•32•5•1•Updated Jul 11, 2018Jul 11, 2018
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