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    13 repositories

    • ProDy

      Public
      A Python Package for Protein Dynamics Analysis
      dynamicsproteinpython
      Python
      •
      Other
      •168•505•13•18•Updated Aug 19, 2025Aug 19, 2025

    • prody-feedstock

      Public
      A conda-smithy repository for prody.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • DruGUI

      Public
      Druggability Suite
      Tcl
      •
      Other
      •9•7•4•1•Updated Jul 30, 2025Jul 30, 2025

    • ProDy-website

      Public
      ProDy Website
      Jupyter Notebook
      •
      MIT License
      •14•2•1•2•Updated Jul 17, 2025Jul 17, 2025

    • prody-feedstock-old

      Public archive
      A conda-smithy repository for prody.
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • NMWiz

      Public
      Normal Mode Wizard
      Tcl
      •4•9•1•1•Updated Oct 8, 2023Oct 8, 2023

    • rhapsody-website

      Public
      PHP
      •1•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • rhapsody

      Public
      Python program, based on Prody, for pathogenicity prediction of human missense variants
      Python
      •
      GNU General Public License v3.0
      •11•10•2•0•Updated Jun 29, 2021Jun 29, 2021

    • coMD

      Public
      This package runs collective molecular dynamics simulations, where collective motions from anisotropic network model normal mode analysis drive all-atom dynamics through targeted molecular dynamics simulations and energy minimization
      simulationspathway-analysissampling-methodsanmcomd
      Rich Text Format
      •
      MIT License
      •6•1•8•1•Updated Aug 10, 2020Aug 10, 2020

    • NMWiz-chimera

      Public
      Python
      •2•2•3•0•Updated Jun 18, 2020Jun 18, 2020

    • rhapsody-tutorials

      Public
      collection of Jupyter Notebooks with tutorials for Rhapsody
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Mar 7, 2020Mar 7, 2020

    • Pharmmaker

      Public
      Making pharmacophore models from druggability simulations
      Tcl
      •3•3•6•0•Updated Sep 17, 2019Sep 17, 2019

    • coMD_docs

      Public
      Python
      •1•2•0•0•Updated Oct 23, 2013Oct 23, 2013