Repositories list

• omero-guide-python

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •1010 forks•1010 stars•11 issue•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •22 forks•11 star•77 issues•11 pull request•Updated Jun 29, 2026Jun 29, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •44 forks•11 star•77 issues•11 pull request•Updated Jun 28, 2026Jun 28, 2026

• napari-omero

  Public
  Browse your OMERO database from within napari.

  omeronapari-pluginnapari

  omeronapari-pluginnapari

  Python

  •

  GNU General Public License v2.0

  •1616 forks•4040 stars•1515 issues•55 pull requests•Updated Jun 26, 2026Jun 26, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •7171 forks•165165 stars•117117 issues•1313 pull requests•Updated Jun 26, 2026Jun 26, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1515 forks•1414 stars•1515 issues•1212 pull requests•Updated Jun 25, 2026Jun 25, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks•66 stars•1515 issues•22 pull requests•Updated Jun 25, 2026Jun 25, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3636 forks•2020 stars•6161 issues•1616 pull requests•Updated Jun 24, 2026Jun 24, 2026

• ansible-role-omero-web

  Public
  Installs and configures OMERO.web and Nginx

  ansibleomeroome+ 1

  ansibleomeroomeopenmicroscopy

  Python

  •

  BSD 2-Clause "Simplified" License

  •1515 forks•22 stars•33 issues•11 pull request•Updated Jun 24, 2026Jun 24, 2026

• ansible-role-omero-server

  Public
  Installs and configures OMERO.server

  ansibleserverrole+ 1

  ansibleserverroleomero

  Python

  •

  BSD 2-Clause "Simplified" License

  •1414 forks•55 stars•77 issues•44 pull requests•Updated Jun 24, 2026Jun 24, 2026

• ansible-role-postgresql

  Public
  Install upstream PostgreSQL server. Optionally creates users and databases.

  ansibledatabasepostgresql+ 1

  ansibledatabasepostgresqlrole

  Python

  •

  BSD 2-Clause "Simplified" License

  •1818 forks•1111 stars•00 issues•00 pull requests•Updated Jun 24, 2026Jun 24, 2026

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats…

  javametadataimage+ 7

  javametadataimageformat-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •256256 forks•423423 stars•150150 issues•1414 pull requests•Updated Jun 24, 2026Jun 24, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •7171 forks•244244 stars•6666 issues•1010 pull requests•Updated Jun 23, 2026Jun 23, 2026

• ome-contributing

  Public
  66 forks•11 star•00 issues•22 pull requests•Updated Jun 22, 2026Jun 22, 2026

• .github

  Public
  Community health files for the @OME organization

  secworkflow-templates

  secworkflow-templates

  33 forks•22 stars•11 issue•11 pull request•Updated Jun 22, 2026Jun 22, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2121 stars•6161 issues•33 pull requests•Updated Jun 20, 2026Jun 20, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated Jun 19, 2026Jun 19, 2026

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. …

  pythonjavaimage+ 3

  pythonjavaimagedatabaseserveromero

  Java

  •

  GNU General Public License v2.0

  •104104 forks•218218 stars•2222 issues•44 pull requests•Updated Jun 17, 2026Jun 17, 2026

• omero-web-docker

  Public
  OMERO.web production docker image

  dockeromeroome+ 2

  dockeromeroomeopenmicroscopyomero-web

  Makefile

  •

  BSD 2-Clause "Simplified" License

  •2222 forks•77 stars•1414 issues•77 pull requests•Updated Jun 17, 2026Jun 17, 2026

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2

  pythonclientdjangowebomero

  Python

  •3939 forks•2424 stars•140140 issues•88 pull requests•Updated Jun 17, 2026Jun 17, 2026

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2

  pythoncomponentlibomeroomero-py

  Python

  •

  GNU General Public License v2.0

  •3535 forks•2828 stars•5757 issues•44 pull requests•Updated Jun 16, 2026Jun 16, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •99 forks•1212 stars•1515 issues•55 pull requests•Updated Jun 16, 2026Jun 16, 2026

• omero-biofilefinder

  Public
  OMERO.web plugin for opening data in BioFile Finder

  Python

  •

  GNU Affero General Public License v3.0

  •33 forks•33 stars•00 issues•33 pull requests•Updated Jun 12, 2026Jun 12, 2026

• presentations

  Public
  HTML-based presentations from the OME team.

  htmlreveal-jspresentations

  htmlreveal-jspresentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1919 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks•99 stars•55 issues•33 pull requests•Updated Jun 9, 2026Jun 9, 2026

• ansible-role-omero-searchengine

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 9, 2026Jun 9, 2026

• omero-cli-transfer

  Public
  An OMERO CLI plugin for creating transfer packets between OMERO servers.

  omeroomero-serveromero-import

  omeroomero-serveromero-import

  Python

  •

  GNU General Public License v2.0

  •1919 forks•1919 stars•77 issues•00 pull requests•Updated Jun 5, 2026Jun 5, 2026

• schemas

  Public
  A repository containing the published OME schemas for www.openmicroscopy.org

  XSLT

  •

  Creative Commons Attribution 4.0 International

  •44 forks•00 stars•11 issue•11 pull request•Updated Jun 3, 2026Jun 3, 2026

• ome-stubs

  Public
  Stubs for optional third-party components

  Java

  •

  Other

  •88 forks•00 stars•00 issues•00 pull requests•Updated Jun 3, 2026Jun 3, 2026

• ome-jai

  Public
  OME Java ImageIO fork (deprecated)

  Java

  •

  Other

  •77 forks•00 stars•11 issue•00 pull requests•Updated Jun 3, 2026Jun 3, 2026