Repositories list

• igo-lims-plugins

  Public
  Sapio LIMS customizations to workflows for IGO

  Java

  •0•2•1•11•Updated Oct 7, 2025Oct 7, 2025

• beagle_cli

  Public
  Beagle API Command Line Utility

  Python

  •1•1•8•4•Updated Oct 6, 2025Oct 6, 2025

• LimsRest

  Public
  the restful service used by the IGO LIMS

  Java

  •2•1•5•4•Updated Oct 6, 2025Oct 6, 2025

• beagle

  Public
  Voyager Backend

  Python

  •

  Apache License 2.0

  •5•2•97•21•Updated Oct 5, 2025Oct 5, 2025

• smile-client

  Public
  Python

  •0•0•0•1•Updated Oct 3, 2025Oct 3, 2025

• smile-server

  Public
  Java

  •4•2•53•1•Updated Oct 2, 2025Oct 2, 2025

• smile-dashboard

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •8•0•0•1•Updated Oct 2, 2025Oct 2, 2025

• igo-sample-submission-node

  Public
  Sample Submission API written in node.js

  JavaScript

  •1•0•1•31•Updated Oct 1, 2025Oct 1, 2025

• forte

  Public
  Functional Observation of RNA Transcriptome Elements/Expression

  Nextflow

  •

  MIT License

  •3•9•31•6•Updated Oct 1, 2025Oct 1, 2025

• tempo

  Public
  CCS research pipeline to process WES and WGS TN pairs

  Groovy

  •7•14•50•11•Updated Sep 30, 2025Sep 30, 2025

• igo-sample-qc-node

  Public
  Sample QC with nodejs backend

  JavaScript

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• ccs_cohort_utils

  Public
  Python

  •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

• igo-demux

  Public
  Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

  Python

  •

  Apache License 2.0

  •1•6•3•2•Updated Sep 29, 2025Sep 29, 2025

• critfhirdeveloper

  Public template
  CRIT FHIR Developer Documentation

  HTML

  •

  Apache License 2.0

  •22k•0•0•1•Updated Sep 25, 2025Sep 25, 2025

• igo-run-qc-node

  Public
  JavaScript

  •0•0•0•1•Updated Sep 22, 2025Sep 22, 2025

• igo-delivery

  Public
  Delivery email, symlinks and permissions for IGO projects

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 22, 2025Sep 22, 2025

• ridgeback

  Public
  Toil API

  Python

  •

  Apache License 2.0

  •2•1•38•6•Updated Sep 19, 2025Sep 19, 2025

• voyager-compose-utils

  Public
  Utils to be used in the voyager docker compose

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• igo-marketplace-login

  Public
  Login application

  JavaScript

  •1•0•0•19•Updated Sep 12, 2025Sep 12, 2025

• Albany

  Public
  Mission Albany

  Python

  •1•0•0•0•Updated Sep 11, 2025Sep 11, 2025

• ACCESS-Pipeline

  Public
  cfDNA Sequencing Pipeline with UMI

  cancer-genomics

  Python

  •

  MIT License

  •3•11•38•14•Updated Sep 9, 2025Sep 9, 2025

• Medidata.RWS.NET.Standard

  Public
  Medidata.RWS.NET.Standard is a comprehensive, fluent .NET API library for Medidata RAVE Web Services (RWS). Modernized for .NET 8.0 and .NET 9.0, it handles boilerplate HTTP communication code, enabling faster integration with RWS APIs through a clean, async-first design.

  C#

  •

  MIT License

  •0•5•0•0•Updated Sep 8, 2025Sep 8, 2025

• igo-landing-page

  Public
  JavaScript

  •1•0•0•6•Updated Sep 8, 2025Sep 8, 2025

• smile-request-filter

  Public
  CMO MetaDB Request Filter app

  Java

  •

  GNU Affero General Public License v3.0

  •4•0•0•0•Updated Sep 5, 2025Sep 5, 2025

• ngs-stats

  Public
  NGS Statistics Database with historical Picard Stats, IGO fastq.gz paths and Sequencer Start & Stop Times

  HTML

  •0•1•2•1•Updated Sep 5, 2025Sep 5, 2025

• echo

  Public
  Go

  •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

• facets-preview

  Public
  Load, review and adjust facets fits

  R

  •3•2•5•0•Updated Sep 4, 2025Sep 4, 2025

• echo-client

  Public
  Echo Client

  Python

  •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

• neoantigen-pipeline

  Public
  Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

  Python

  •

  MIT License

  •0•3•12•0•Updated Aug 27, 2025Aug 27, 2025

• mutalyzer

  Public
  Tool suite for HGVS variant descriptions

  Python

  •

  MIT License

  •10•0•0•0•Updated Aug 21, 2025Aug 21, 2025