Repositories list

• starinformatics.github.io

  Public
  Web site for STARInformatics

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• TestHarness

  Public
  Fork of SRI TestHarness

  Python

  •2•0•0•0•Updated May 17, 2024May 17, 2024

• Tests

  Public
  Fork of Translator 'tests'

  2•0•0•0•Updated Oct 17, 2023Oct 17, 2023

• ReasonerAPI

  Public
  NCATS Biomedical Translator Reasoners Standard API

  Python

  •29•0•0•0•Updated Sep 14, 2023Sep 14, 2023

• OperationsAndWorkflows

  Public
  A repo for the nascent "operations and workflow" language

  Python

  •5•0•0•0•Updated May 13, 2023May 13, 2023

• biomed-workbench

  Public
  JavaScript

  •

  MIT License

  •0•0•5•33•Updated Jan 3, 2023Jan 3, 2023

• translator_extensions

  Public
  The Translator-specific metadata extensions used in SmartAPI registry

  4•0•0•0•Updated Nov 28, 2022Nov 28, 2022

• semanticscience

  Public
  The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their…

  HTML

  •12•0•0•0•Updated May 30, 2022May 30, 2022

• beacon-aggregator

  Public
  A web service that operates over the Beacon network to provide a single software interface over the all the Beacons

  Java

  •

  Other

  •1•0•0•3•Updated May 20, 2022May 20, 2022

• s3-tar

  Public
  Stream s3 data into a tar file in s3

  Python

  •

  MIT License

  •12•0•0•0•Updated Aug 31, 2021Aug 31, 2021

• kgx

  Public
  KGX is a Python library for exchanging Knowledge Graphs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •37•0•0•0•Updated Jun 12, 2021Jun 12, 2021

• linkml

  Public
  Linked Open Data Modeling Language

  Python

  •

  Creative Commons Zero v1.0 Universal

  •162•0•0•0•Updated Apr 23, 2021Apr 23, 2021

• connexion

  Public
  Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

  Python

  •

  Other

  •784•0•0•0•Updated Mar 12, 2021Mar 12, 2021

• biolinkml

  Public
  Biolink modeling language

  Python

  •

  Creative Commons Zero v1.0 Universal

  •12•0•0•0•Updated Dec 18, 2020Dec 18, 2020

• igv.js-flask

  Public
  Example project for integrating igv.js and flask

  Python

  •

  MIT License

  •15•0•0•0•Updated Apr 6, 2020Apr 6, 2020

• translator-testing-framework

  Public
  A testing framework for Translator using tests written in Behave

  Gherkin

  •

  BSD 3-Clause "New" or "Revised" License

  •14•0•0•0•Updated Dec 25, 2019Dec 25, 2019

• workflow-service

  Public
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows

  Python

  •

  Apache License 2.0

  •21•0•0•0•Updated Nov 15, 2019Nov 15, 2019

• ontobio

  Public
  python library for working with ontologies and ontology associations

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •34•0•0•0•Updated Oct 19, 2019Oct 19, 2019

• wikidata-beacon

  Public
  Wikidata Semantic Query API

  Python

  •6•0•0•0•Updated Oct 18, 2019Oct 18, 2019

• mediKanren

  Public
  Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

  Scheme

  •

  MIT License

  •53•1•0•0•Updated May 23, 2019May 23, 2019

• ncats-reasoner-api

  Public
  NCATS reasoner placeholder repo

  Java

  •0•0•0•0•Updated Aug 10, 2018Aug 10, 2018

• GenomeD3Plot

  Public
  SVG based genome viewer written in javascript using D3

  JavaScript

  •

  GNU General Public License v2.0

  •26•0•0•0•Updated Jun 14, 2018Jun 14, 2018

• BrAPI_GenesysSunflower

  Public
  Using Breeding API with Sunflower

  0•0•0•0•Updated May 25, 2018May 25, 2018

• cropportal

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Jul 25, 2017Jul 25, 2017

• equivalent-concept-clique

  Public
  NCATS Translator Knowledge Bio Equivalent Concept Clique Compilation Microservice

  Java

  •

  MIT License

  •0•0•0•0•Updated Jun 20, 2017Jun 20, 2017