Repositories list

• offtracker

  Public
  Software for analyzing Tracking-seq data

  Python

  •

  GNU Affero General Public License v3.0

  •1•2•0•0•Updated Nov 20, 2025Nov 20, 2025

• CIBER

  Public
  CIBER is a causal inference framework for cell fate analysis

  causal-inferencecell-fate-determinationcell-state

  HTML

  •

  MIT License

  •1•2•0•0•Updated Mar 3, 2025Mar 3, 2025

• COMSE

  Public
  Analysis of Single-Cell RNA-seq Data Using Community Detection Based Feature Selection

  R

  •0•0•0•0•Updated Aug 10, 2024Aug 10, 2024

• MALT1_research-

  Public
  Code for "Targeting Both Death Domain and Paracaspase Domain of MALT1 Overcomes Resistance to Immune Checkpoint Blockade Therapy"

  R

  •0•0•0•0•Updated Aug 2, 2024Aug 2, 2024

• SPATAC-seq

  Public
  HTML

  •4•12•2•0•Updated Jan 23, 2024Jan 23, 2024

• zebrafish_bw

  Public
  0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

• AML_multiomics

  Public
  Integrative single-cell ATAC-Seq and mitochondria DNA mutation analysis reveal transcriptional regulatory programs in acute myeloid leukemia

  R

  •1•1•0•0•Updated Aug 23, 2023Aug 23, 2023

• coSIR

  Public
  MATLAB

  •1•0•0•0•Updated Apr 11, 2023Apr 11, 2023

• sc-GC

  Public
  Python

  •

  MIT License

  •11•31•2•0•Updated Aug 24, 2022Aug 24, 2022

• SIGNET

  Public
  Python

  •5•4•3•0•Updated Aug 21, 2022Aug 21, 2022

• LINEAnalysis

  Public
  The Analysis of LINE in public data

  R

  •0•1•0•0•Updated Jul 6, 2022Jul 6, 2022

• Chrom-Lasso

  Public
  Chrom-Lasso is Hi-C cis interaction calling tool

  hi-c

  C++

  •

  MIT License

  •2•0•1•0•Updated Mar 3, 2022Mar 3, 2022

• BIOC281

  Public
  Repository for BIOC 281: Introduction to Single Cell Expression Analysis

  Jupyter Notebook

  •7•0•0•0•Updated Oct 30, 2020Oct 30, 2020