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    125 repositories

    • gReLU

      Public
      gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
      Python
      •
      MIT License
      •44•272•22•4•Updated Oct 4, 2025Oct 4, 2025

    • checked

      Public
      batch R CMD check management
      rchecksrevdeps
      R
      •
      Other
      •1•7•13•0•Updated Oct 3, 2025Oct 3, 2025

    • BayesERtools

      Public
      R
      •
      Other
      •1•6•4•1•Updated Oct 2, 2025Oct 2, 2025

    • phase1b

      Public
      R
      •
      Other
      •4•11•12•0•Updated Oct 1, 2025Oct 1, 2025

    • jmpost

      Public
      R
      •4•16•54•1•Updated Oct 1, 2025Oct 1, 2025

    • decima

      Public
      Decima is a Python library to train sequence models on single-cell RNA-seq data.
      Jupyter Notebook
      •
      Other
      •8•47•5•1•Updated Sep 30, 2025Sep 30, 2025

    • TimeSeriesExplainabilityData

      Public
      0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • SpatialQPFs

      Public
      R
      •0•3•0•0•Updated Sep 29, 2025Sep 29, 2025

    • spex-tools

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • PerturbQA

      Public
      Python
      •
      Other
      •3•23•1•0•Updated Sep 23, 2025Sep 23, 2025

    • deepevfi

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • nfnull

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • rnacounts

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • spex_frontend

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • beignet

      Public
      A standard library for biological research.
      Python
      •
      MIT License
      •7•29•30•0•Updated Sep 2, 2025Sep 2, 2025

    • gneSeqCOO

      Public
      HTML
      •
      Other
      •2•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • PerturbView

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Aug 28, 2025Aug 28, 2025

    • psborrow

      Public
      An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
      HTML
      •
      Other
      •3•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • gneprop

      Public
      GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.
      Jupyter Notebook
      •
      Other
      •0•8•1•0•Updated Aug 21, 2025Aug 21, 2025

    • nodags-flows

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•11•2•0•Updated Aug 19, 2025Aug 19, 2025

    • BRAID

      Public
      BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
      10•215•0•0•Updated Aug 13, 2025Aug 13, 2025

    • sc_simvar

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Jul 16, 2025Jul 16, 2025

    • SIGnature

      Public
      SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) datasets through precomputed gene attribution scores.
      Python
      •
      Other
      •4•22•0•0•Updated Jul 4, 2025Jul 4, 2025

    • scimilarity

      Public
      A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
      Python
      •
      Other
      •15•218•19•0•Updated Jun 26, 2025Jun 26, 2025

    • BayesERbook

      Public
      R
      •
      Other
      •1•3•1•0•Updated Jun 25, 2025Jun 25, 2025

    • gReLU-applications

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • PepMapViz

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • Islander

      Public
      Jupyter Notebook
      •
      MIT License
      •24•122•0•0•Updated Jun 15, 2025Jun 15, 2025

    • spex

      Public
      Jupyter Notebook
      •
      Other
      •0•2•2•0•Updated Jun 13, 2025Jun 13, 2025

    • LNPseqR

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025