Repositories list

• MATLAB-plate-reader-analysis

  Public
  Script to analyse plate-reader data (OD and fluorescence) in MATLAB

  MATLAB

  •0•0•0•0•Updated Sep 26, 2022Sep 26, 2022

• ode_composer

  Public
  Python

  •2•1•3•0•Updated Jun 28, 2021Jun 28, 2021

• Plate-reader-analysis

  Public
  A short code to normalise OD and fluorescence from plate reader data, and calculate growth rate

  R

  •1•0•0•0•Updated Nov 28, 2020Nov 28, 2020

• opentrons_protocols

  Public
  Repo for our opentrons protocols

  Python

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Nov 23, 2020Nov 23, 2020

• Whole-cell-model-Weisse-2015-

  Public
  MATLAB

  •0•0•0•0•Updated Apr 27, 2020Apr 27, 2020

• GBS-Wiki

  Public
  0•0•0•0•Updated Feb 28, 2020Feb 28, 2020

• Gene-expression-rate-calculator

  Public
  Automatic calculation of gene expression rate from time-course fluorescence assays on microplate reader (bacterial cells)

  MATLAB

  •1•1•0•0•Updated Nov 13, 2019Nov 13, 2019

• ode_composer_matlab

  Public archive
  ODE composer is an SBL based system identification toolbox, which builds ODE models from time-series data

  optimizationsystem-identification

  optimizationsystem-identification

  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Jul 25, 2019Jul 25, 2019

• QuorumSensingModel

  Public
  MATLAB

  •0•0•0•0•Updated Aug 16, 2018Aug 16, 2018

• Cell_simulator

  Public
  Integrated development environment for the design of synthetic biological systems, from DNA sequence to systems level

  synthetic-biologycomputer-aided-designescherichia-coli

  synthetic-biologycomputer-aided-designescherichia-coli

  MATLAB

  •0•0•0•0•Updated Jul 9, 2018Jul 9, 2018

• Growth-rate-calculator

  Public
  Growth rate calculator for microplate reader experiments

  synthetic-biologydata-analysisbacteria+ 2

  synthetic-biologydata-analysisbacteriagrowth-ratesmicroplate-reader

  MATLAB

  •

  MIT License

  •1•0•0•0•Updated Jun 19, 2018Jun 19, 2018

• ChemComms-calculator

  Public
  CAD tool that automatically identifies orthogonal chemical communication channels for the design of synthetic consortia

  synthetic-biologycomputer-aided-designquorum-sensing+ 1

  synthetic-biologycomputer-aided-designquorum-sensingsynthetic-consortia

  MATLAB

  •

  MIT License

  •1•1•0•0•Updated Apr 12, 2018Apr 12, 2018