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@BioMeDS BioMedical Data Science

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    16 repositories

    • CTFd

      Public
      CTFs as you need them
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • onboarding-base-module

      Public
      MIT License
      •0•1•7•0•Updated Sep 25, 2025Sep 25, 2025

    • cmr-dynamic-radiomics-stability

      Public
      MATLAB
      •
      MIT License
      •0•0•2•0•Updated Sep 24, 2025Sep 24, 2025

    • DTI_Processing_Snakemake

      Public
      Python
      •0•2•1•0•Updated Aug 14, 2025Aug 14, 2025

    • Python_Course_WS24

      Public
      Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • starfish

      Public
      starfish: unified pipelines for image-based transcriptomics
      Python
      •
      MIT License
      •71•0•0•0•Updated Jul 4, 2025Jul 4, 2025

    • f18-psma-pet-ct-ai

      Public
      Detection of local prostate cancer recurrence from PET/CT scans using deep learning
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 2, 2025Jul 2, 2025

    • mudRapp-seq

      Public
      In-situ sequencing with multiple direct RNA-assisted padlock probing (mudRapp-seq)
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jun 10, 2025Jun 10, 2025

    • minimal-git-example

      Public
      A minimal example to show how git works
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • shiny-gggenomes

      Public
      shiny/shinylive demo for gggenomes
      visualizationalignmentggplotshiny-r
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • Python_Course_WS23

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • metabarcoding_pipeline

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • onboarding

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jul 6, 2023Jul 6, 2023

    • ukbb_cardiac

      Public
      Some code for processing and analysing UK Biobank cardiac MR images.
      Python
      •
      Apache License 2.0
      •70•1•0•0•Updated Sep 1, 2022Sep 1, 2022

    • torchio

      Public
      Medical imaging toolkit for deep learning
      Python
      •
      Apache License 2.0
      •252•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • GWAS

      Public
      R
      •
      MIT License
      •9•0•0•0•Updated Apr 11, 2022Apr 11, 2022