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    19 repositories

    • agentomics-ml

      Public
      Autonomous agentic system for supervised machine learning model development.
      Python
      •
      MIT License
      •5•23•1•3•Updated Jun 2, 2026Jun 2, 2026

    • FuNmiRBench

      Public
      Benchmarking Python package for functional miRNA target prediction
      Python
      •0•1•16•2•Updated Jun 2, 2026Jun 2, 2026

    • miRBench_paper

      Public
      Python
      •0•4•2•2•Updated Jun 2, 2026Jun 2, 2026

    • DiscrimAlign

      Public
      Finding substitution weights and gap penalties from pairs of labeled biological sequences
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated May 26, 2026May 26, 2026

    • genomic_region_annotator

      Public
      Genomic interval annotation tool with transcript-first logic, supporting Ensembl GTFs, relative coordinates, and detailed region classification.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 22, 2026May 22, 2026

    • mirna-experiment-search

      Public
      A pipeline to search GEO/SRA for miRNA-related experiments (RNA-seq, CLIP, qPCR, etc.) with support for filters such as species, cell lines, perturbation type, …
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2026May 21, 2026

    • miRBind_2.0

      Public
      Working Repository for the MiRbind 2.0 project
      Python
      •
      MIT License
      •0•4•0•2•Updated May 21, 2026May 21, 2026

    • DBmiRNA

      Public
      Internal database
      Python
      •
      MIT License
      •0•0•0•0•Updated May 18, 2026May 18, 2026

    • varMT

      Public
      Store and retrieve aggregated population frequencies for genomic variants.
      Python
      •0•1•0•0•Updated May 6, 2026May 6, 2026

    • PostGram

      Public
      Localization-aware modeling of post-transcriptional regulation in 3′UTRs
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • variant_db_benchmarking

      Public
      Python
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • ParaDISM

      Public
      A highly precise algorithmic pipeline for accurate mapping of NGS reads from highly homologous regions
      Python
      •
      MIT License
      •0•5•0•0•Updated Mar 12, 2026Mar 12, 2026

    • PHACT-miRBind

      Public
      Code for the PHACT-miRBind Project
      Python
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • miRAlign

      Public
      Elucidating miRNA-target interactions through a position-aware local alignment with learnable weights
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • ScienceInTheCity

      Public
      HTML
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • DLforGenomics

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Jun 13, 2024Jun 13, 2024

    • templates

      Public
      Coding Templates and Best Practices
      Python
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • MALTAomics-Summer-School

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Oct 18, 2023Oct 18, 2023

    • HybriDetector

      Public
      R
      •
      Apache License 2.0
      •3•0•0•0•Updated Sep 3, 2023Sep 3, 2023
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