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    36 repositories

    • FEGA_SOPs

      Public
      Standard Operating Procedures templates for nodes of Federated EGA
      GNU Affero General Public License v3.0
      •0•1•1•0•Updated Feb 24, 2026Feb 24, 2026

    • Ready4BioDataManagement

      Public
      Ready for BioData Management? is a capacity-building program in data management for the life sciences to empower researchers and institutions in managing their …
      bioinformaticsrdmtraining-materials
      bioinformaticsrdmtraining-materials
      Other
      •1•9•1•1•Updated Feb 9, 2026Feb 9, 2026

    • ADELE-deployment

      Public
      Shell
      •1•1•0•0•Updated Jan 19, 2026Jan 19, 2026

    • FEGA-user-docs

      Public
      0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • GDI-Documentation

      Public
      0•1•0•0•Updated Nov 19, 2025Nov 19, 2025

    • ADELE-S-I

      Public
      Storage & Interfaces setup for integration with ADELE
      Shell
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • ADELE-Funnel

      Public
      Shell
      •
      MIT License
      •1•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • ADELE-REMS

      Public
      REMS setup for integration with ADELE
      Shell
      •
      MIT License
      •1•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • ADELE

      Public
      TypeScript
      •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • beacon2-ri-api

      Public
      About Beacon v2 Reference Implementation (API) deployed at Portugal. Base implementation by https://github.com/EGA-archive/beacon2-ri-api/
      Python
      •
      Apache License 2.0
      •0•0•0•18•Updated Sep 10, 2025Sep 10, 2025

    • sassy_biotheme

      Public
      Drupal theme that powers the BioData.pt website. Based on the SASS Starter Kit for the Barrio Bootstrap 5 theme.
      CSS
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • computational-tools-resources

      Public
      Discover the resources that ELIXIR, the European bioinformatics infrastructure, has at your disposal to help you thorugh all phases of biological data gathering…
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • tmd-parser

      Public
      ELIXIR Training Metrics Database Parser
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • beacon-2.x-training-ui

      Public
      Beaconv2 UI for the Portugal node.
      HTML
      •0•1•0•0•Updated Apr 15, 2025Apr 15, 2025

    • standard-operating-procedures

      Public
      A repository for managing standard operating procedure (SOP) resources for the GDI project.
      Python
      •
      GNU Affero General Public License v3.0
      •6•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • Beacon2-Privacy-Strategy

      Public
      Implementation of Beacon v2 with support of privacy-protection algorithms using a budget strategy.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 29, 2024Nov 29, 2024

    • biosurfdb

      Public
      BioSurfFB: Biosurfactants and biodegradation database
      0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • biodatapt-theme

      Public archive
      A Drupal theme for the BioData.pt website based on Vartheme BS5
      Twig
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • Beaconization-scripts

      Public
      Scripts used to map data from XML file in NCBI to the BFF template (XLSX). To run: python3 mapXML2XLSX.py
      Python
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • D-fferential

      Public archive
      R
      •2•2•0•1•Updated May 8, 2024May 8, 2024

    • Biome-Shiny

      Public archive
      A Shiny R app for microbiome visualisation
      R
      •
      Creative Commons Attribution 4.0 International
      •2•9•4•0•Updated May 8, 2024May 8, 2024

    • D-cellerate

      Public archive
      A Shiny app for analyzing and visualizing scRNA-seq data.
      R
      •
      Creative Commons Attribution 4.0 International
      •2•4•0•0•Updated May 8, 2024May 8, 2024

    • .github

      Public
      0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • docker-galaxy-compose

      Public
      A basic galaxy container for docker-compose setups. Includes a conda installation.
      Dockerfile
      •
      MIT License
      •1•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • wiki

      Public
      BioData.pt Internal Wiki
      0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

    • bioschemas-data

      Public
      Apache License 2.0
      •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • FEGA-onboarding

      Public
      Collection of onboarding materials for establishing a Federated EGA Node.
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •27•0•0•0•Updated May 18, 2023May 18, 2023

    • LocalEGA-code

      Public
      A federated storage for sensitive data
      Python
      •
      Apache License 2.0
      •21•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • Documents

      Public
      0•0•0•0•Updated Oct 17, 2022Oct 17, 2022

    • GROMACS

      Public
      0•0•0•0•Updated Sep 6, 2021Sep 6, 2021
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