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Add docker file to build opensim-java with moco #19

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Add docker file to build opensim-java with moco #19

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53 changes: 53 additions & 0 deletions opensim-core/opensim-java/dockerfile-ubuntu-with-moco
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FROM stanfordnmbl/opensim-deps:4.4-with-moco

LABEL maintainer="Ayman Habib"

# The following sets timezone to avoid prompt for timezone when installing packages
ENV TZ=America/Los_Angeles
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
RUN apt-get update && DEBIAN_FRONTEND=noninteractive && apt-get --yes install \
libpcre3 libpcre3-dev flex bison

# install openjdk8
RUN apt-get install -y openjdk-8-jdk \
&& apt-get install -y ant \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/* \
&& rm -rf /var/cache/oracle-jdk8-installer;

# Fix certificate issue https://bugs.launchpad.net/ubuntu/+source/ca-certificates-java/+bug/983302
RUN apt-get update \
&& apt-get install -y ca-certificates-java \
&& apt-get clean \
&& update-ca-certificates -f \
&& rm -rf /var/lib/apt/lists/* \
&& rm -rf /var/cache/oracle-jdk8-installer;

# Setup JAVA_HOME, this is useful for docker commandline
ENV JAVA_HOME /usr/lib/jvm/java-8-openjdk-amd64/
RUN export JAVA_HOME

#install SWIG
RUN mkdir ~/swig-source && cd ~/swig-source \
&& wget https://github.com/swig/swig/archive/refs/tags/rel-4.0.2.tar.gz \
&& tar xzf rel-4.0.2.tar.gz \
&& cd swig-rel-4.0.2 \
&& sh autogen.sh \
&& ./configure --prefix=$HOME/swig --disable-ccache \
&& make \
&& make -j4 install \
&& rm -rf ~/swig-source

RUN mkdir opensim_build \
&& cd opensim_build \
&& cmake ../opensim-core \
-DSWIG_DIR=~/swig/share/swig -DSWIG_EXECUTABLE=~/swig/bin/swig -DBUILD_JAVA_WRAPPING=ON -DBUILD_TESTING=OFF \
-DCMAKE_INSTALL_PREFIX=$OPENSIM_INSTALL -DOPENSIM_DEPENDENCIES_DIR=$OPENSIM_DEPENDENCIES_HOME \
-DOPENSIM_C3D_PARSER=ezc3d -DSWIG_DOXYGEN=OFF -DOPENSIM_WITH_CASADI=ON -DOPENSIM_WITH_TROPTER=ON \
&& make -j8 \
&& make install \
&& rm -rf ../opensim_build \
&& rm -rf ~/opensim_dependencies_install \
&& rm -rf $HOME/swig

# image stored at stanfordnmbl/opensim-java