Update biomedgps-data documentation from open-prophetdb/biomedgps-dat… #5
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| name: Deploy Documentation | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allow manual trigger | |
| workflow_dispatch: | |
| # Trigger when other repositories push to their docs | |
| repository_dispatch: | |
| types: [docs-updated] | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| # Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
| # However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: false | |
| jobs: | |
| # Build job | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Detect package manager | |
| id: detect-package-manager | |
| run: | | |
| if [ -f "${{ github.workspace }}/yarn.lock" ]; then | |
| echo "manager=yarn" >> $GITHUB_OUTPUT | |
| echo "command=install" >> $GITHUB_OUTPUT | |
| echo "runner=yarn" >> $GITHUB_OUTPUT | |
| exit 0 | |
| elif [ -f "${{ github.workspace }}/package.json" ]; then | |
| echo "manager=npm" >> $GITHUB_OUTPUT | |
| echo "command=ci" >> $GITHUB_OUTPUT | |
| echo "runner=npx --no-install" >> $GITHUB_OUTPUT | |
| exit 0 | |
| else | |
| echo "Unable to determine package manager" | |
| echo "manager=none" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: "20" | |
| cache: ${{ steps.detect-package-manager.outputs.manager != 'none' && steps.detect-package-manager.outputs.manager || '' }} | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v4 | |
| with: | |
| # Automatically inject basePath in your Next.js configuration file and disable | |
| # server side image optimization (https://nextjs.org/docs/api-reference/next/image#unoptimized). | |
| # | |
| # You may remove this line if you want to manage the configuration yourself. | |
| static_site_generator: next | |
| - name: Restore cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| .next/cache | |
| # Generate a new cache whenever packages or source files change. | |
| key: ${{ runner.os }}-nextjs-${{ hashFiles('**/package-lock.json', '**/yarn.lock') }}-${{ hashFiles('**.[jt]s', '**.[jt]sx') }} | |
| # If source files changed but packages didn't, rebuild from a prior cache. | |
| restore-keys: | | |
| ${{ runner.os }}-nextjs-${{ hashFiles('**/package-lock.json', '**/yarn.lock') }}- | |
| - name: Install dependencies | |
| if: steps.detect-package-manager.outputs.manager != 'none' | |
| run: ${{ steps.detect-package-manager.outputs.manager }} ${{ steps.detect-package-manager.outputs.command }} | |
| - name: Check for component documentation directories | |
| id: check-docs | |
| run: | | |
| echo "Checking for documentation directories..." | |
| # Create directories if they don't exist | |
| mkdir -p network-medicine-extension | |
| mkdir -p biomedgps-data | |
| mkdir -p biomedgps-models | |
| mkdir -p biomedgps-explainer | |
| mkdir -p biomedgps | |
| # Check which directories have actual documentation | |
| for dir in network-medicine-extension biomedgps-data biomedgps-models biomedgps-explainer biomedgps; do | |
| if [ -d "$dir" ] && [ "$(ls -A $dir 2>/dev/null)" ]; then | |
| echo "✓ Found documentation in $dir/" | |
| else | |
| echo "⚠ No documentation found in $dir/, creating placeholder" | |
| # Create a simple placeholder index.html | |
| cat > "$dir/index.html" << EOF | |
| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> | |
| <title>$dir - Documentation Coming Soon</title> | |
| <style> | |
| body { | |
| font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, sans-serif; | |
| display: flex; | |
| justify-content: center; | |
| align-items: center; | |
| height: 100vh; | |
| margin: 0; | |
| background: linear-gradient(135deg, #f8fafc 0%, #e2e8f0 100%); | |
| color: #1f2937; | |
| } | |
| .container { | |
| text-align: center; | |
| padding: 2rem; | |
| background: white; | |
| border-radius: 16px; | |
| box-shadow: 0 10px 25px rgba(0,0,0,0.1); | |
| max-width: 500px; | |
| } | |
| h1 { | |
| color: #6366f1; | |
| margin-bottom: 1rem; | |
| font-size: 2rem; | |
| } | |
| p { | |
| color: #6b7280; | |
| font-size: 1.1rem; | |
| margin-bottom: 2rem; | |
| } | |
| .back-btn { | |
| background: linear-gradient(135deg, #6366f1 0%, #ec4899 100%); | |
| color: white; | |
| padding: 0.75rem 2rem; | |
| border: none; | |
| border-radius: 50px; | |
| text-decoration: none; | |
| font-weight: 600; | |
| transition: transform 0.2s; | |
| } | |
| .back-btn:hover { | |
| transform: translateY(-2px); | |
| } | |
| </style> | |
| </head> | |
| <body> | |
| <div class="container"> | |
| <h1>$dir</h1> | |
| <p>Documentation is being prepared and will be available soon.</p> | |
| <a href="../" class="back-btn">← Back to Home</a> | |
| </div> | |
| </body> | |
| </html> | |
| EOF | |
| fi | |
| done | |
| - name: Build with Next.js | |
| if: steps.detect-package-manager.outputs.manager != 'none' | |
| run: ${{ steps.detect-package-manager.outputs.runner }} next build | |
| - name: Static HTML export with Next.js | |
| if: steps.detect-package-manager.outputs.manager != 'none' | |
| run: ${{ steps.detect-package-manager.outputs.runner }} next export | |
| - name: Prepare static files for deployment | |
| run: | | |
| # If we have a Next.js build, use it | |
| if [ -d "out" ]; then | |
| echo "Using Next.js build output" | |
| cp -r out/* ./deploy/ || mkdir -p deploy && cp -r out/* ./deploy/ | |
| else | |
| echo "Using static HTML files" | |
| mkdir -p deploy | |
| # Copy main files | |
| cp index.html deploy/ | |
| cp styles.css deploy/ | |
| cp script.js deploy/ | |
| # Copy component directories | |
| for dir in network-medicine-extension biomedgps-data biomedgps-models biomedgps-explainer biomedgps; do | |
| if [ -d "$dir" ]; then | |
| cp -r "$dir" deploy/ | |
| fi | |
| done | |
| fi | |
| # Ensure we have an index.html in the deploy directory | |
| if [ ! -f "deploy/index.html" ]; then | |
| cp index.html deploy/ | |
| fi | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: ./deploy | |
| # Deployment job | |
| deploy: | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| # Notify other repositories about successful deployment | |
| notify: | |
| runs-on: ubuntu-latest | |
| needs: [build, deploy] | |
| if: github.ref == 'refs/heads/main' && github.event_name == 'push' | |
| steps: | |
| - name: Notify deployment success | |
| run: | | |
| echo "Documentation successfully deployed!" | |
| echo "Site URL: ${{ steps.deployment.outputs.page_url }}" |