In this release, we publish the updated results for the NeurIPS camera-ready. It contains a fully reworked documentation, all the models we used, and support for proteins.
This release contains the following files:
models.zip. A zip file containing the pre-trained models. Unzip it and put the content intomodels/.deshaw_dummy.zip. A zip file containing dummy data for the proteins produced by our model, in case the fast-folding data is not available. Put the content of this file intostorage/deshaw.minipeptides.zipandminipeptides.z01..z06. These files contain the data for the dipeptides, coarse-grained and ready to be used with our code. Put the content intostorage/minipeptides. You can unzip the file like this:
zip -F minipeptides.zip --out minipeptides-all.zip
unzip minipeptides-all.zip