Search results

Tumour-only somatic variant calling

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#241 In nf-core/rnavar;

· chstubbe opened on Sep 30, 2025

FILTER column empty and no annotation output

bugSomething isn't workingSomething isn't working

Status: Open.

#236 In nf-core/rnavar;

· gianfilippo opened on Sep 7, 2025

Check if all files in nft-ignore are actually unstable or even produced

Status: Open.

#226 In nf-core/rnavar;

· maxulysse opened on Aug 25, 2025

samtools not indexing in csi

bugSomething isn't workingSomething isn't working

Status: Open.

#217 In nf-core/rnavar;

· altuffin opened on Jul 11, 2025

GATK4_MERGEVCFS not sorted

bugSomething isn't workingSomething isn't working

Status: Open.

#214 In nf-core/rnavar;

· yannic-chen opened on Jul 7, 2025

Adding a field for custom params for STAR

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#207 In nf-core/rnavar;

· genomaxx opened on May 3, 2025

Add minimap2

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#205 In nf-core/rnavar;

· maxulysse opened on Apr 20, 2025

Adding support for somatic variant calling (MuTect2)

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#204 In nf-core/rnavar;

· amizeranschi opened on Apr 10, 2025

Variant annotation VEP plugins

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/rnavar;

· leurwu opened on Mar 6, 2025

· 

1.2.0

Add samtools markdup for UMI aware markdup

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#181 In nf-core/rnavar;

· matthdsm opened on Mar 3, 2025

· 

1.2.0

Thoughts on submitting RNAVar to a journal?

questionFurther information is requestedFurther information is requested

Status: Open.

#147 In nf-core/rnavar;

· Shaun-Regenbaum opened on Jun 26, 2024

· 

1.2.0

Add samtools mpileup as an alternative variant caller

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#110 In nf-core/rnavar;

· Leon-Bichmann opened on Nov 28, 2023

· 

1.2.0