I'm a postdoctoral researcher in the Laboratory of RNA Biology (ERA Chairs Group) at the International Institute of Molecular and Cell Biology in Warsaw.
I study RNA tails: how long they are, what they are made of, and how to measure both reliably. Most of that work runs on Oxford Nanopore direct RNA sequencing, and most of it ends up as software other people can run on their own data.
| ninetails | Detects non-adenosine residues inside poly(A) tails from nanopore signal, using a convolutional classifier. Author and maintainer. Docs · Paper |
| nanotail2 | Poly(A) tail length analysis, comparison and plotting for direct RNA sequencing. Author. |
| NanoQuRe | Quality control reporting for nanopore runs. Contributor. |
| rDNAmine | Analysis of long repetitive rDNA sequences in nanopore reads. Co-author. Paper |
Mostly R, increasingly Python, with SQL for the laboratory databases that keep sequencing metadata traceable.
I draw. Figures, schematics and graphical abstracts for papers and press, the visual identification of the DEGRONOPEDIA web server, and science illustration on my Facebook page, Biorysunki. There is a gallery on the site.
Website · ORCID · Google Scholar · LinkedIn · Laboratory