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gnomon_biotype Process Fails Repeatedly with Exit Status 3 in EGAPX Pipeline

Status: Open.

#179 In ncbi/egapx;

· kingbin97 opened on Oct 7, 2025

Oct 1, 2025 Notice

Status: Open.

#178 In ncbi/egapx;

· etvedte opened on Oct 1, 2025

prepare_submission error "This SeqFeat should not be partial"

Status: Open.

#176 In ncbi/egapx;

· kvertacnik opened on Sep 22, 2025

"gnomon_filter_models" can't proceed further

Status: Open.

#175 In ncbi/egapx;

· tiantian-chen opened on Sep 12, 2025

'egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer' run with long time.

Status: Open.

#174 In ncbi/egapx;

· meiyang12 opened on Sep 12, 2025

BUSCO 0.3.2-alpha results vs BUSCO 0.4.2-alpha results

Status: Open.

#170 In ncbi/egapx;

· sidevshiy opened on Sep 5, 2025

The amount of transcriptome data available

Status: Open.

#169 In ncbi/egapx;

· tiantian-chen opened on Sep 5, 2025

No gene symbol information in "complete.genomic.gtf"

Status: Open.

#168 In ncbi/egapx;

· shin0727 opened on Sep 4, 2025

Does it support outputting soft masked genomes?

Status: Open.

#167 In ncbi/egapx;

· lixiang117423 opened on Aug 29, 2025

BUG: Treats local read files as SRR, if it supplied as path to read list.

Status: Open.

#165 In ncbi/egapx;

· Alteroldis opened on Aug 25, 2025

rnaseq_collapse:run_rnaseq_collapse (2)

Status: Open.

#164 In ncbi/egapx;

· tiantian-chen opened on Aug 20, 2025

Q: Changing of annotation output before submission

Status: Open.

#163 In ncbi/egapx;

· Alteroldis opened on Aug 13, 2025