v18.7.0

Taxonomy

• Bug Fix: Resolved an issue where nodes were not correctly expanding in the taxonomy browser.
• Added option to include 'incertae sedis' nodes to the list of ranks in the filtered subtree.

v18.6.0

Taxonomy

• Added option to view standard taxonomic ranks only or all ranks
• Added rank name and improved sorting to the taxonomy browser

v18.5.3

Command-line tools

• Fixed a bug where newlines were missing between genome records in assembly_report.jsonl, which resulted in dataformat reporting an error (Many thanks to @ddb4 for reporting this bug in #523)

v18.5.2

Internal Services

• We made improvements to our internal systems to ensure better performance and reliability across our services.

v18.5.1

Command-line tools

• Fixed a bug where datasets summary gene used with --report ids_only returned the full data report instead of the abbreviated report with GeneIDs

v18.5.0

Documentation

• Updated CLI virus --complete-only flag description to indicate that this filters for complete sequences, as determined by the submitter, and not complete genomes (See datasets reference for datasets download virus genome accession). This is related to #510.
• Updated Average Nucleotide Identity (ANI) documentation. This is related to #479.

Services

• Features: Return an alert message to notify API/CLI users of upcoming 24 hr+ service outage beginning 7/25 at 9 pm EDT
• Return 200 instead of 404 when using the annotation_report endpoint to request genome annotations for a genome for which annotation is not available. Related to #321.

v18.4.1

Internal Services

• We made improvements to our internal systems to ensure better performance and reliability across our services.

v18.4.0

Command-line tool

• Fixed an issue where merged TaxIDs were not redirecting to their updated TaxID. Issue #511
• Resolved a bug that caused the CLI to hang when requesting orthologs for a gene with none available.

v18.3.1

Documentation

• Updated the Gene How-Tos to clarify that symbol queries check for matches against both gene symbols and synonyms.

Taxonomy

• Modified the Taxonomy Filtered Subtree API to include unspecified nodes below the species level in the response.

v18.3.0

Command-line tools

• Fixed a bug with dataformat reported in Issue 501