Taxonomy visualizer, intended to allow quick cross-sample and cross-location comparisons.
Hosted at https://data.securebio.org/taxviz/
You can upload a TSV file with the following columns:
1. taxid: the NCBI taxid for the clade
2. parent_taxid: the NCBI taxid for the clade's parent clade
3. name: the name of the clade
4+. <sample>: YYYY-MM-DD-Location. For example, 2023-12-03-HTP
You can see an exaple at https://data.securebio.org/taxviz/datasets/uci/counts.tsv
You can set a default dataset by putting it in the same directory with the name
counts.tsv and it will automatically load on startup.
To deploy with multiple datasets, put each one in datasets/<dataset>/counts.tsv
and then ln -s index.html datasets/<dataset>/index.html. This is how
https://data.securebio.org/taxviz/datasets/uci/ is implemented.